Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J15
(593 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9XSY9|OSTP_SHEEP Osteopontin precursor (Bone sialoprote... 31 2.7
sp|Q6P902|TXND2_MOUSE Thioredoxin domain-containing protein... 30 3.5
sp|P40021|YEM3_YEAST Hypothetical 119.3 kDa protein in PIP1... 30 4.6
sp|Q9AJ82|SCA4_RICMN Antigenic heat-stable 120 kDa protein ... 30 4.6
sp|Q57794|Y348_METJA Hypothetical protein MJ0348 30 6.0
sp|Q9AJ79|SCA4_RICJA Antigenic heat-stable 120 kDa protein ... 30 6.0
sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 (T-box... 29 7.8
>sp|Q9XSY9|OSTP_SHEEP Osteopontin precursor (Bone sialoprotein-1) (Secreted
phosphoprotein 1) (SPP-1)
Length = 278
Score = 30.8 bits (68), Expect = 2.7
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Frame = +2
Query: 152 LKRPSKPIEKVNYHTEQKPNGNIMSY-EERSIRYAEERRRILGSQSEMIEEDII--EVLN 322
LK SK + N + + S+ E + A ++ L SE D + E+
Sbjct: 160 LKSKSKKFRRSNVESPDATEEDFTSHIESEEMHDAPKKTSQLTDHSEETNSDELPKELTP 219
Query: 323 KFNE---YSSRSEGARETKLpreSHKKYNSMGSDSLNNGDRRENPMILHRLSKADS 481
K E +S+R E +KL +E H + + D + D+R I H L S
Sbjct: 220 KAKEESKHSNRIESQENSKLSQEFHSLEDKLDLDHKSEEDKRLKIRISHELDSVSS 275
>sp|Q6P902|TXND2_MOUSE Thioredoxin domain-containing protein 2 (Spermatid-specific
thioredoxin-1) (Sptrx-1) (Thioredoxin-4)
Length = 515
Score = 30.4 bits (67), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 194 TEQKPNGNIMSYEERSIRYAEERRRILGSQSEMIEEDIIEVLNKFNEYSSRSEGARE 364
T Q GN + E ++ +E + LG++ E +EE ++ V+ E+ + A E
Sbjct: 374 TIQSQEGNTIKSSEEDVQLSESKLLGLGAEIETLEEGLVRVIKDKEEFEEVLKDAGE 430
>sp|P40021|YEM3_YEAST Hypothetical 119.3 kDa protein in PIP1-GLN3 intergenic region
Length = 1076
Score = 30.0 bits (66), Expect = 4.6
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Frame = +2
Query: 182 VNYHTEQKPNGNIMSYEERSIRYAEERRRILGSQSEMIEEDIIEVLNKFNEYSSRSEGAR 361
V Y+++ +P N+ + Y +E IE+D E N+ NE S
Sbjct: 466 VKYYSKPEPAANVYIDD----LYEDEN---FDDDMNCIEDD--ESGNEGNEICGLSTRFE 516
Query: 362 ETKLpreSHKKYNSM-----------GSDSLNNGDRREN 445
ET L KK+N + G D+ NNGD E+
Sbjct: 517 ETSLKSNKVKKFNDLFNLSDDDEEEDGKDNSNNGDENES 555
>sp|Q9AJ82|SCA4_RICMN Antigenic heat-stable 120 kDa protein (PS120) (120 kDa antigen)
(Protein PS 120)
Length = 1011
Score = 30.0 bits (66), Expect = 4.6
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Frame = +2
Query: 134 QPKFQILKRPSK-PIEKVN-YHTEQKPNGNIMSYEER---SIRYAEERRRILGSQSEMIE 298
Q IL SK +EKVN + PNGN+ + EE+ SI+ +E + G++S E
Sbjct: 841 QETSSILNNISKLAVEKVNNFRAMLSPNGNLKTLEEKKEESIKKVDELVKAFGTKSSTEE 900
Query: 299 EDIIEVLNKFNEYSSRSEGARET--KLpreSHKKYNSMGSDSLNNGDRR 439
+ N ++ + E +T KL +E K+ ++ + S+ D R
Sbjct: 901 QQSFIKTNLIDDKTLSKEVRLQTIDKLLQE-QKRAEAIENPSVKTEDVR 948
>sp|Q57794|Y348_METJA Hypothetical protein MJ0348
Length = 795
Score = 29.6 bits (65), Expect = 6.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 110 KLIIKTMSQP-KFQILKRPSKPIEKVNYHTEQKPNGNIMSYEERSIRYAEERRRI 271
K I++ M QP K + SK ++K+N NG ++S S+R++ E I
Sbjct: 721 KAIVREMGQPRKIETFTILSKELQKINSSITVDYNGQLISMPVYSVRFSLENSNI 775
>sp|Q9AJ79|SCA4_RICJA Antigenic heat-stable 120 kDa protein (PS120) (120 kDa antigen)
(Protein PS 120) (rps120)
Length = 1018
Score = 29.6 bits (65), Expect = 6.0
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Frame = +2
Query: 134 QPKFQILKRPSK-PIEKVN-YHTEQKPNGNIMSYEER---SIRYAEERRRILGSQSEMIE 298
Q IL SK +EKVN + PNGN+ + EE+ SI+ +E + G++S E
Sbjct: 842 QETSSILNNISKLAVEKVNNFRAMLSPNGNLKTLEEKKEESIKKVDELVKAFGTKSSTEE 901
Query: 299 EDIIEVLNKFNEYSSRSEGARET--KLpreSHKKYNSMGSDSLNNGDRR 439
+ N ++ + E +T KL +E K+ ++ + S+ D R
Sbjct: 902 QQSFIKANLIDDKTLSKEIRLQTIDKLLQE-QKRAEAIENPSVKTEDVR 949
>sp|P57082|TBX4_HUMAN T-box transcription factor TBX4 (T-box protein 4)
Length = 545
Score = 29.3 bits (64), Expect = 7.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -1
Query: 566 IKPLLNXXXXXXYHQSRNTLRHQQITQPTNQPCSICAESWDSRVYHHYLENRSPSNYI 393
+ PLL ++Q N H Q+ +P + P S DS +++H L+ R + ++
Sbjct: 290 VGPLLGTHQALQHYQHENGA-HSQLAEPQDLPLSTFPTQRDSSLFYHCLKRRDGTRHL 346
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,404,804
Number of Sequences: 369166
Number of extensions: 1101469
Number of successful extensions: 3166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3164
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)