Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J14
(320 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42036|RS143_ARATH 40S ribosomal protein S14-3 124 5e-29
sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2 124 9e-29
sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1 124 9e-29
sp|P13471|RS14_RAT 40S ribosomal protein S14 123 1e-28
sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1) 123 1e-28
sp|P62264|RS14_MOUSE 40S ribosomal protein S14 >gi|50403752... 123 1e-28
sp|O22584|RS14_LUPLU 40S ribosomal protein S14 122 2e-28
sp|P48150|RS14_CAEEL 40S ribosomal protein S14 122 3e-28
sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2) 122 3e-28
sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59) 122 3e-28
>sp|P42036|RS143_ARATH 40S ribosomal protein S14-3
Length = 150
Score = 124 bits (312), Expect = 5e-29
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
R+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T
Sbjct: 54 RITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQS 113
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTPIP D+T
Sbjct: 114 ALRALARSGMKIGRIEDVTPIPTDST 139
>sp|Q9CAX6|RS142_ARATH 40S ribosomal protein S14-2
Length = 150
Score = 124 bits (310), Expect = 9e-29
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
R+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T
Sbjct: 54 RITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQS 113
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTPIP D+T
Sbjct: 114 ALRALARSGMKIGRIEDVTPIPTDST 139
>sp|Q9SIH0|RS141_ARATH 40S ribosomal protein S14-1
Length = 150
Score = 124 bits (310), Expect = 9e-29
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
R+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+HV++RATGG K++T
Sbjct: 54 RITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQS 113
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTPIP D+T
Sbjct: 114 ALRALARSGMKIGRIEDVTPIPTDST 139
>sp|P13471|RS14_RAT 40S ribosomal protein S14
Length = 151
Score = 123 bits (308), Expect = 1e-28
Identities = 60/86 (69%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
RVTGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 55 RVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQS 114
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTPIP D+T
Sbjct: 115 ALRALARSGMKIGRIEDVTPIPSDST 140
>sp|P19950|RS141_MAIZE 40S ribosomal protein S14 (Clone MCH1)
Length = 149
Score = 123 bits (308), Expect = 1e-28
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
R+TGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG K++T
Sbjct: 53 RITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQS 112
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTP+P D+T
Sbjct: 113 ALRALARSGMKIGRIEDVTPVPTDST 138
>sp|P62264|RS14_MOUSE 40S ribosomal protein S14
sp|P62263|RS14_HUMAN 40S ribosomal protein S14
sp|P62265|RS14_CRIGR 40S ribosomal protein S14
Length = 151
Score = 123 bits (308), Expect = 1e-28
Identities = 60/86 (69%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
RVTGGMKVKADRDESSPYAAMLAAQDVA+RCK+LGITA+H+++RATGG +++T
Sbjct: 55 RVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQS 114
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTPIP D+T
Sbjct: 115 ALRALARSGMKIGRIEDVTPIPSDST 140
>sp|O22584|RS14_LUPLU 40S ribosomal protein S14
Length = 150
Score = 122 bits (307), Expect = 2e-28
Identities = 60/86 (69%), Positives = 69/86 (80%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
R+TGGMKVKADRDESSPYAAMLAAQDVA RCK+LGITA+H+++RATGG K++T
Sbjct: 54 RITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQS 113
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTPIP D+T
Sbjct: 114 ALRALARSGMKIGRIEDVTPIPSDST 139
>sp|P48150|RS14_CAEEL 40S ribosomal protein S14
Length = 152
Score = 122 bits (306), Expect = 3e-28
Identities = 60/86 (69%), Positives = 69/86 (80%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
RVTGGMKVKADRDESSPYAAMLAAQDVA+RCKQLGI A+H+++RATGGT+++T
Sbjct: 56 RVTGGMKVKADRDESSPYAAMLAAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQS 115
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
+GMKIGRIEDVTPIP D T
Sbjct: 116 ALRALARAGMKIGRIEDVTPIPSDCT 141
>sp|P19951|RS142_MAIZE 40S ribosomal protein S14 (Clone MCH2)
Length = 150
Score = 122 bits (305), Expect = 3e-28
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
R+TGGMKVKADRDESSPYAAMLA+QDVA+RCK+LGITA+H+++RATGG K++T
Sbjct: 54 RITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQS 113
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SGMKIGRIEDVTP+P D+T
Sbjct: 114 ALRALARSGMKIGRIEDVTPVPTDST 139
>sp|P27069|RS14_KLULA 40S ribosomal protein S14 (RP59)
Length = 137
Score = 122 bits (305), Expect = 3e-28
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +2
Query: 2 RVTGGMKVKADRDESSPYAAMLAAQDVAERCKQLGITAVHVRVRATGGTKSRTXXXXXXX 181
RVTGGMKVKADRDESSPYAAMLAAQDVA +CK++GITAVH+++RATGGT+S+T
Sbjct: 41 RVTGGMKVKADRDESSPYAAMLAAQDVAAKCKEVGITAVHIKIRATGGTRSKTPGPGGQA 100
Query: 182 XXXXXXXSGMKIGRIEDVTPIPHDTT 259
SG++IGRIEDVTP+P D+T
Sbjct: 101 ALRALARSGLRIGRIEDVTPVPSDST 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,689,126
Number of Sequences: 369166
Number of extensions: 387759
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)