Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J10
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor 45 4e-05
sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (To... 40 0.001
sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3... 40 0.002
sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromo... 39 0.003
sp|Q90495|ECAR_ECHCA Ecarin precursor 36 0.024
sp|Q9XTD6|NAS12_CAEEL Zinc metalloproteinase nas-12 precurs... 35 0.041
sp|P55953|MT_STENE Metallothionein (MT) 34 0.12
sp|Q6L8H4|KRA51_HUMAN Keratin-associated protein 5-1 (Kerat... 33 0.16
sp|Q58699|Y1303_METJA Hypothetical polyferredoxin-like prot... 33 0.16
sp|Q09244|YP95_CAEEL Hypothetical protein C28H8.5 precursor 33 0.20
>sp|P30652|YOW6_CAEEL Hypothetical protein ZK643.6 precursor
Length = 180
Score = 45.4 bits (106), Expect = 4e-05
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +1
Query: 73 ECADTGDDCSSKTGEDCTN--GDVLDK-CAKSCHLCGECADSRPDCAFFKERGDCDKMD- 240
EC D +DCS ++ + C K+C+ C C D+ C + RG C K D
Sbjct: 106 ECTDLANDCSYNQNRCSVKEYSSLMHRLCPKTCNACNICEDANKMCPIWVPRGFCSKFDH 165
Query: 241 DRV---CRKTCGVC 273
D+V C K+C +C
Sbjct: 166 DKVQKSCAKSCNIC 179
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +1
Query: 70 DECADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCAFFKER---GDCDKMD 240
+ C G + +KTG + G EC D DC++ + R + +
Sbjct: 83 NRCPHNGTNPENKTGGNGGTGTQ------------ECTDLANDCSYNQNRCSVKEYSSLM 130
Query: 241 DRVCRKTCGVCS 276
R+C KTC C+
Sbjct: 131 HRLCPKTCNACN 142
>sp|P54190|TES26_TOXCA 26 kDa secreted antigen precursor (Toxocara excretory-secretory
antigen 26) (TES-26)
Length = 262
Score = 40.4 bits (93), Expect = 0.001
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +1
Query: 46 LIVAAMCEDECADTGDDCSSKTGEDCTN--GDVL-DKCAKSCHLCGECADSRPDCAFFKE 216
L V++ +C D+ DC++ G T VL ++C ++C+ C +C D +CA
Sbjct: 13 LFVSSGVAQQCMDSASDCAANAGSCFTRPVSQVLQNRCQRTCNTC-DCRDEANNCAASIN 71
Query: 217 RGDCDKMDDRV---CRKTCGVCS 276
+ V C+KTCG+C+
Sbjct: 72 LCQNPTFEPLVRDRCQKTCGLCA 94
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 64 CEDE---CADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGEC 180
C DE CA + + C + T E V D+C K+C LC C
Sbjct: 59 CRDEANNCAASINLCQNPTFEPL----VRDRCQKTCGLCAGC 96
>sp|Q19673|TYR3_CAEEL Putative tyrosinase-like protein tyr-3 precursor
Length = 683
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Frame = +1
Query: 64 CEDECADTGDDCS---SKTGEDCTN-GDVLDKCAKSCHLC------GECADSRPDCAFFK 213
C+ D C ++ G+ +N G + +C SC +C G CAD DCA +
Sbjct: 576 CDSPMCYNEDQCCPIWAQRGQCRSNPGYMTCQCKVSCGVCRPNYVYGPCADYHYDCAAWA 635
Query: 214 ERGDC--DKMDDRVCRKTCGVC 273
RG+C +K CR++C C
Sbjct: 636 RRGECLKNKWMPENCRRSCNTC 657
Score = 32.3 bits (72), Expect = 0.35
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Frame = +1
Query: 148 CAKSCHLCG-------ECADSRPDCAFFKERGDCDKMD---DRVCRKTCGVC 273
C SC C EC+D +CA + G+C+K CR +C C
Sbjct: 489 CKASCRQCTPNYNINEECSDRHTNCAMWSRSGECNKNPLWMSENCRSSCQKC 540
>sp|Q09662|YS51_CAEEL Hypothetical protein ZK673.1 in chromosome II precursor
Length = 154
Score = 39.3 bits (90), Expect = 0.003
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 18/96 (18%)
Frame = +1
Query: 43 GLIVAAMCEDECADTGDDCSSKTGEDCTNGD----VLDKCAKSCHLCG--------ECAD 186
G A+ C D D DC+ T C+N + C K+C CG +C D
Sbjct: 60 GATTASTCAD---DPNTDCTQYTSL-CSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVD 115
Query: 187 SRPDCAFFKERGDCDKM------DDRVCRKTCGVCS 276
S +CA +++ G C + C KTC +C+
Sbjct: 116 SSTNCANWEKNGFCSSTFYDCANKKQYCAKTCKLCT 151
>sp|Q90495|ECAR_ECHCA Ecarin precursor
Length = 616
Score = 36.2 bits (82), Expect = 0.024
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 58 AMCEDECADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDC 201
A C + C D C K G +C NG+ DKC K EC +R DC
Sbjct: 425 ADCRNPCCDAAT-CKLKPGAECGNGECCDKC-KIRKAGTECRPARDDC 470
>sp|Q9XTD6|NAS12_CAEEL Zinc metalloproteinase nas-12 precursor (Nematode astacin 12)
Length = 384
Score = 35.4 bits (80), Expect = 0.041
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 29/104 (27%)
Frame = +1
Query: 49 IVAAMCEDECADTGDDCSSKTGEDCTNGD----VLDKCAKSCHLCG-------------- 174
+VA+ C+D + + + G C N ++ C K+C LC
Sbjct: 282 VVASTCQDVATAVSCEGNRRRGM-CKNPFYKQMMIKSCQKTCRLCSYTRMIDEDDDLTPN 340
Query: 175 ------ECADSRPDCAFFKERGDC-----DKMDDRVCRKTCGVC 273
+C D P C + G C D + ++C KTC +C
Sbjct: 341 TTVKSVKCEDKHPRCDIYSHNGFCTLPFYDDVRYQLCAKTCNLC 384
>sp|P55953|MT_STENE Metallothionein (MT)
Length = 64
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 76 CADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCA 204
C G +C+ K E CT G+ C K CG+C ++ CA
Sbjct: 8 CCKEGKECACKGKECCTTGE----CCKDGTCCGKCTNAACKCA 46
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Frame = +1
Query: 73 ECADTGDDCSSKTGEDCTNGDVLDKCAKSCHLCGE-------CADSRPDCA 204
ECA G +C + TGE C +G KC + C + C+ + +CA
Sbjct: 14 ECACKGKECCT-TGECCKDGTCCGKCTNAACKCADGCKCGSGCSCTEGNCA 63
>sp|Q6L8H4|KRA51_HUMAN Keratin-associated protein 5-1 (Keratin-associated protein 5.1)
(Ultrahigh sulfur keratin-associated protein 5.1)
Length = 278
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Frame = +1
Query: 64 CEDECADTGDD---CSSKTGEDCTNGDVLDKCAKSCHLCGECADSRPDCAFFKERGDCDK 234
C+ C G C S G C +G + C SC CG CA S+ C + C K
Sbjct: 183 CKGGCGSCGGSKGGCGSGCG-GCGSGCGVPVCCCSCSSCGSCAGSKGGCGSSCSQCSCCK 241
Query: 235 MDDRVCRKTCG 267
C CG
Sbjct: 242 --PCCCSSGCG 250
>sp|Q58699|Y1303_METJA Hypothetical polyferredoxin-like protein MJ1303
Length = 501
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = +1
Query: 67 EDECADTGDDCSSKTGEDCTNGDV--LDKCAKSCHLCGECADSRPDCAFFKERGDCDKMD 240
E++C +SK E C + L+ + SC CGECA + P+ A + +D
Sbjct: 17 EEKCQSCPFSQTSKCMEACPTDAIFLLNNKSFSCLTCGECARNCPNKAIKRNEFGGYYVD 76
Query: 241 DRVCRKTCGVCS 276
R C CG+C+
Sbjct: 77 RRRC-NGCGICA 87
>sp|Q09244|YP95_CAEEL Hypothetical protein C28H8.5 precursor
Length = 302
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +1
Query: 31 IVFLGLIVAAMCEDECADTGDDCS---SKTGEDCTNGDVLDK-CAKSCHLCGECADSRPD 198
I+ L +A +C DT +C+ + DC N ++++ C ++C CGE D + D
Sbjct: 65 IILLSTSYSAKIAPKCRDTDMNCAVWVATNTSDCENVELVNSHCPRTCQTCGEPIDPKYD 124
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,384,483
Number of Sequences: 369166
Number of extensions: 658842
Number of successful extensions: 2601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2574
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)