Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J07
(770 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 331 1e-90
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 311 2e-84
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 310 3e-84
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 310 3e-84
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 310 4e-84
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 310 4e-84
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 306 3e-83
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 304 2e-82
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 304 2e-82
sp|P34728|ARF_CRYNE ADP-ribosylation factor 303 4e-82
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 331 bits (849), Expect = 1e-90
Identities = 164/169 (97%), Positives = 165/169 (97%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 537
NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK
Sbjct: 135 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK 183
Score = 34.3 bits (77), Expect = 0.38
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 3 THLLDRLFGKKEMRI 47
THLLDRLFGKKEMRI
Sbjct: 6 THLLDRLFGKKEMRI 20
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 311 bits (796), Expect = 2e-84
Identities = 154/167 (92%), Positives = 157/167 (94%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
K++ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRERV EAREELMRML EDELRDAVLLVFANKQDLP AM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 531
N AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LKNRS
Sbjct: 135 NAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 310 bits (794), Expect = 3e-84
Identities = 152/168 (90%), Positives = 158/168 (94%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAVLL+FANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSK 534
N AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN ++
Sbjct: 135 NAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNANR 182
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 310 bits (794), Expect = 3e-84
Identities = 153/166 (92%), Positives = 158/166 (95%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 528
N AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 310 bits (793), Expect = 4e-84
Identities = 153/166 (92%), Positives = 158/166 (95%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 528
N AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 310 bits (793), Expect = 4e-84
Identities = 153/166 (92%), Positives = 158/166 (95%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVLLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 528
N AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 135 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 306 bits (785), Expect = 3e-83
Identities = 152/166 (91%), Positives = 155/166 (93%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAVLLVF NKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVLLVFVNKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 528
N AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 135 NAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 304 bits (779), Expect = 2e-82
Identities = 150/171 (87%), Positives = 157/171 (91%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAVLLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRSKK*N 543
N AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS ++N+ N
Sbjct: 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQKANCN 185
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 304 bits (778), Expect = 2e-82
Identities = 147/166 (88%), Positives = 157/166 (94%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
K++ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTVWDVGGQDKI
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQG+IFVVDSNDRER++EA EEL RMLNEDELRDA+LLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 528
N AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 135 NAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 303 bits (775), Expect = 4e-82
Identities = 148/167 (88%), Positives = 155/167 (92%)
Frame = +1
Query: 31 KKK*EYSMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 210
KK+ MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 211 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAM 390
RPLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+LLVFANKQDLPNAM
Sbjct: 75 RPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALLLVFANKQDLPNAM 134
Query: 391 NPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 531
N AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 135 NAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,150,827
Number of Sequences: 369166
Number of extensions: 1440460
Number of successful extensions: 4583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4534
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7163732800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)