Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_J06
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 148 7e-36
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 116 4e-26
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 115 5e-26
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 115 6e-26
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 114 1e-25
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 107 2e-23
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 106 4e-23
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 94 2e-19
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 87 2e-17
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 75 1e-13
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 148 bits (374), Expect = 7e-36
Identities = 70/165 (42%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYER---RSDDRRGN 171
+MSR+C + K G+ + C+ CG+ GH+SR+CP + +G RGGY + RS + G
Sbjct: 80 HMSRDCPNSAKPGAA-KGFECYKCGQEGHLSRDCPSS--QGGSRGGYGQKRGRSGAQGGY 136
Query: 172 QRSTECYNCHETGHMSRECPKQRN--QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQI 345
CY C + GH+SR+CP + G+ + CYKCG+ GH++RDC G
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR 196
Query: 346 KCYNCNQNGHMSRECPN----GQSDKKCYKCNKVGHMSRDCNE*G 468
KCY C ++GHMSRECP+ G D+ CYKC K GH+SR+C E G
Sbjct: 197 KCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAG 241
Score = 139 bits (350), Expect = 4e-33
Identities = 77/196 (39%), Positives = 96/196 (48%), Gaps = 36/196 (18%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGD-------RRGGYERRSDD 159
+ +REC E G +RS CF CGE GHMSRECP G R G S D
Sbjct: 26 HYARECPEADSKGD-ERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRD 84
Query: 160 -----RRGNQRSTECYNCHETGHMSRECPKQRNQGSR------------------NNGCY 270
+ G + ECY C + GH+SR+CP + GSR + CY
Sbjct: 85 CPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQG-GSRGGYGQKRGRSGAQGGYSGDRTCY 143
Query: 271 KCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQS------DKKCYKCNK 432
KCG+ GH++RDC G CY C GH+SR+CPNGQ D+KCYKC +
Sbjct: 144 KCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGE 203
Query: 433 VGHMSRDCNE*GSIGT 480
GHMSR+C GS G+
Sbjct: 204 SGHMSRECPSAGSTGS 219
Score = 131 bits (330), Expect = 9e-31
Identities = 64/168 (38%), Positives = 86/168 (51%), Gaps = 22/168 (13%)
Frame = +1
Query: 19 TENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNC 198
TE+ K + S +C NCG+ GH +RECP+ D++GD +RST C+ C
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPEADSKGD---------------ERSTTCFRC 48
Query: 199 HETGHMSRECPKQRNQGSRN-NGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGH 375
E GHMSRECP + G+ C++CGE GHM+RDC + +CY C Q GH
Sbjct: 49 GEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDC-PNSAKPGAAKGFECYKCGQEGH 107
Query: 376 MSRECPNGQ---------------------SDKKCYKCNKVGHMSRDC 456
+SR+CP+ Q D+ CYKC GH+SRDC
Sbjct: 108 LSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 118 bits (295), Expect = 1e-26
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
++SR+C + SG C+ CG++GH+SR+CP +GGY D +
Sbjct: 150 HISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNG------QGGYSGAGDRK------ 197
Query: 181 TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGN---DRQERQIKC 351
CY C E+GHMSRECP + GS + CYKCG+ GH++R+C + GG+ R C
Sbjct: 198 --CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTC 255
Query: 352 YNCNQNGHMSRECPN 396
Y C + GH+SR+CP+
Sbjct: 256 YKCGEAGHISRDCPS 270
Score = 76.6 bits (187), Expect = 3e-14
Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +1
Query: 214 MSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECP 393
MS +R + + C CG+ GH AR+C E + ER C+ C + GHMSRECP
Sbjct: 1 MSETEDVKRPRTESSTSCRNCGKEGHYARECP-EADSKGDERSTTCFRCGEEGHMSRECP 59
Query: 394 N-----GQSDKKCYKCNKVGHMSRDCNE*GSIGTAK 486
N C++C + GHMSRDC G AK
Sbjct: 60 NEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAK 95
Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGA---CFNCGESGHMSRECPQN 111
++SREC E S G R G C+ CGE+GH+SR+CP +
Sbjct: 232 HISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 116 bits (290), Expect = 4e-26
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 1/133 (0%)
Frame = +1
Query: 61 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 240
C+NCGE+GH+ EC C+NC++TGH+SRECP+ +
Sbjct: 49 CYNCGETGHVRSECTVQ------------------------RCFNCNQTGHISRECPEPK 84
Query: 241 NQGSRNN-GCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKC 417
+ CYKCG HMA+DC +E G +KCY C Q GHMSR+C Q+D+ C
Sbjct: 85 KTSRFSKVSCYKCGGPNHMAKDCMKEDGISG----LKCYTCGQAGHMSRDC---QNDRLC 137
Query: 418 YKCNKVGHMSRDC 456
Y CN+ GH+S+DC
Sbjct: 138 YNCNETGHISKDC 150
Score = 93.2 bits (230), Expect = 3e-19
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Frame = +1
Query: 58 ACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQ 237
AC+ CG+ GH++ +C D R CYNC++ GH+ +C
Sbjct: 5 ACYVCGKIGHLAEDC-----------------DSER------LCYNCNKPGHVQTDCTMP 41
Query: 238 RNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQ----- 402
R + CY CGE GH+ +CT + +C+NCNQ GH+SRECP +
Sbjct: 42 RTVEFKQ--CYNCGETGHVRSECTVQ----------RCFNCNQTGHISRECPEPKKTSRF 89
Query: 403 SDKKCYKCNKVGHMSRDC 456
S CYKC HM++DC
Sbjct: 90 SKVSCYKCGGPNHMAKDC 107
Score = 75.1 bits (183), Expect = 9e-14
Identities = 33/92 (35%), Positives = 50/92 (54%)
Frame = +1
Query: 187 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 366
CY C + GH++ +C +R CY C + GH+ DCT R +CYNC +
Sbjct: 6 CYVCGKIGHLAEDCDSERL-------CYNCNKPGHVQTDCTMP----RTVEFKQCYNCGE 54
Query: 367 NGHMSRECPNGQSDKKCYKCNKVGHMSRDCNE 462
GH+ EC + ++C+ CN+ GH+SR+C E
Sbjct: 55 TGHVRSEC----TVQRCFNCNQTGHISRECPE 82
Score = 59.3 bits (142), Expect = 5e-09
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDN-RGDRRGGYERRSDDRRGNQR 177
++SREC E KK+ + +C+ CG HM+++C + D G + + R Q
Sbjct: 75 HISRECPEPKKTSRFSKV-SCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN 133
Query: 178 STECYNCHETGHMSRECPK 234
CYNC+ETGH+S++CPK
Sbjct: 134 DRLCYNCNETGHISKDCPK 152
Score = 44.7 bits (104), Expect = 1e-04
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 340 QIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 456
Q CY C + GH++ +C S++ CY CNK GH+ DC
Sbjct: 3 QKACYVCGKIGHLAEDC---DSERLCYNCNKPGHVQTDC 38
Score = 32.3 bits (72), Expect = 0.70
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 403 SDKKCYKCNKVGHMSRDCN 459
S K CY C K+GH++ DC+
Sbjct: 2 SQKACYVCGKIGHLAEDCD 20
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 115 bits (289), Expect = 5e-26
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 9/146 (6%)
Frame = +1
Query: 52 SGACFNCGESGHMSRECPQNDNRG-----DRRGGYERRSDDRRGNQRSTE----CYNCHE 204
S CF CG SGH +RECP RG RGG+ + DR S+ CY C E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGF---TSDRGFQFVSSSLPDICYRCGE 59
Query: 205 TGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSR 384
+GH++++C Q ++ CY CG GH+A+DC + ++ER+ CYNC + GH++R
Sbjct: 60 SGHLAKDCDLQEDE-----ACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLAR 110
Query: 385 ECPNGQSDKKCYKCNKVGHMSRDCNE 462
+C + ++KCY C + GH+ +DC +
Sbjct: 111 DCDHA-DEQKCYSCGEFGHIQKDCTK 135
Score = 96.7 bits (239), Expect = 3e-20
Identities = 44/137 (32%), Positives = 69/137 (50%)
Frame = +1
Query: 46 QRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRE 225
Q AC+NCG GH++++C + +R CYNC + GH++R+
Sbjct: 70 QEDEACYNCGRGGHIAKDCKEPK------------------REREQCCYNCGKPGHLARD 111
Query: 226 CPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQS 405
C Q CY CGE GH+ +DCT ++KCY C + GH++ C + S
Sbjct: 112 CDHADEQ-----KCYSCGEFGHIQKDCT----------KVKCYRCGETGHVAINC-SKTS 155
Query: 406 DKKCYKCNKVGHMSRDC 456
+ CY+C + GH++R+C
Sbjct: 156 EVNCYRCGESGHLAREC 172
Score = 73.6 bits (179), Expect = 3e-13
Identities = 35/105 (33%), Positives = 58/105 (55%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+++++C E K+ +R C+NCG+ GH++R+C D + G + +
Sbjct: 83 HIAKDCKEPKR----EREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFGHIQKDCTK 135
Query: 181 TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 315
+CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 136 VKCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 175
Score = 28.9 bits (63), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 403 SDKKCYKCNKVGHMSRDCNE*GSIG 477
S +C+KC + GH +R+C G G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRG 26
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 115 bits (288), Expect = 6e-26
Identities = 55/142 (38%), Positives = 82/142 (57%), Gaps = 5/142 (3%)
Frame = +1
Query: 52 SGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTE-----CYNCHETGHM 216
S CF CG +GH +RECP RG RG RS R G Q + CY C E+GH+
Sbjct: 3 SNECFKCGRTGHWARECPTGIGRG--RG---MRSRGRAGFQFMSSSLPDICYRCGESGHL 57
Query: 217 SRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN 396
+++C Q ++ CY CG GH+A+DC + ++ER+ CYNC + GH++R+C +
Sbjct: 58 AKDCDLQEDK-----ACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLARDCDH 108
Query: 397 GQSDKKCYKCNKVGHMSRDCNE 462
++KCY C + GH+ +DC +
Sbjct: 109 A-DEQKCYSCGEFGHIQKDCTK 129
Score = 96.7 bits (239), Expect = 3e-20
Identities = 44/137 (32%), Positives = 69/137 (50%)
Frame = +1
Query: 46 QRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRE 225
Q AC+NCG GH++++C + +R CYNC + GH++R+
Sbjct: 64 QEDKACYNCGRGGHIAKDCKEPK------------------REREQCCYNCGKPGHLARD 105
Query: 226 CPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQS 405
C Q CY CGE GH+ +DCT ++KCY C + GH++ C + S
Sbjct: 106 CDHADEQ-----KCYSCGEFGHIQKDCT----------KVKCYRCGETGHVAINC-SKTS 149
Query: 406 DKKCYKCNKVGHMSRDC 456
+ CY+C + GH++R+C
Sbjct: 150 EVNCYRCGESGHLAREC 166
Score = 73.6 bits (179), Expect = 3e-13
Identities = 35/105 (33%), Positives = 58/105 (55%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+++++C E K+ +R C+NCG+ GH++R+C D + G + +
Sbjct: 77 HIAKDCKEPKR----EREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFGHIQKDCTK 129
Query: 181 TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 315
+CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 130 VKCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 169
Score = 28.9 bits (63), Expect = 7.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 403 SDKKCYKCNKVGHMSRDC 456
S +C+KC + GH +R+C
Sbjct: 2 SSNECFKCGRTGHWAREC 19
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 114 bits (286), Expect = 1e-25
Identities = 55/146 (37%), Positives = 82/146 (56%), Gaps = 9/146 (6%)
Frame = +1
Query: 52 SGACFNCGESGHMSRECPQNDNRG-----DRRGGYERRSDDRRGNQRSTE----CYNCHE 204
S CF CG SGH +RECP RG RGG+ + DR S+ CY C E
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGF---TSDRGFQFVSSSLPDICYRCGE 59
Query: 205 TGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSR 384
+GH++++C Q + CY CG GH+A+DC + ++ER+ CYNC + GH++R
Sbjct: 60 SGHLAKDCDLQ------EDACYNCGRGGHIAKDCKE----PKREREQCCYNCGKPGHLAR 109
Query: 385 ECPNGQSDKKCYKCNKVGHMSRDCNE 462
+C + ++KCY C + GH+ +DC +
Sbjct: 110 DCDHA-DEQKCYSCGEFGHIQKDCTK 134
Score = 103 bits (258), Expect = 2e-22
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGA--------------------CFNCGESGHMSRECPQNDNR 120
+ +REC G G RS C+ CGESGH++++C ++
Sbjct: 14 HWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDA 73
Query: 121 --GDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHM 294
RGG+ + +R CYNC + GH++R+C Q CY CGE GH+
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK-----CYSCGEFGHI 128
Query: 295 ARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 456
+DCT+ +KCY C + GH++ C S+ CY+C + GH++R+C
Sbjct: 129 QKDCTK----------VKCYRCGETGHVAINCSK-TSEVNCYRCGESGHLAREC 171
Score = 73.6 bits (179), Expect = 3e-13
Identities = 35/105 (33%), Positives = 58/105 (55%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+++++C E K+ +R C+NCG+ GH++R+C D + G + +
Sbjct: 82 HIAKDCKEPKR----EREQCCYNCGKPGHLARDCDHADEQKCYSCG---EFGHIQKDCTK 134
Query: 181 TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQE 315
+CY C ETGH++ C K + CY+CGE+GH+AR+CT E
Sbjct: 135 VKCYRCGETGHVAINCSK-----TSEVNCYRCGESGHLARECTIE 174
Score = 28.9 bits (63), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 403 SDKKCYKCNKVGHMSRDCNE*GSIG 477
S +C+KC + GH +R+C G G
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRG 26
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 107 bits (266), Expect = 2e-23
Identities = 51/131 (38%), Positives = 73/131 (55%)
Frame = +1
Query: 64 FNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQRN 243
F CG SGH +R CP+ G RRGG R S CY C E+G ++ C
Sbjct: 7 FACGHSGHWARGCPRG-GAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCV---- 61
Query: 244 QGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKKCYK 423
N CY CG +GH+A+DC + ++ER+ CY C + GH++R+C + Q ++KCY
Sbjct: 62 --LLGNICYNCGRSGHIAKDCK----DPKRERRQHCYTCGRLGHLARDC-DRQKEQKCYS 114
Query: 424 CNKVGHMSRDC 456
C K+GH+ +DC
Sbjct: 115 CGKLGHIQKDC 125
Score = 78.2 bits (191), Expect = 1e-14
Identities = 36/110 (32%), Positives = 55/110 (50%)
Frame = +1
Query: 61 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 240
C+NCG SGH++++C D +R +R CY C GH++R+C +Q+
Sbjct: 67 CYNCGRSGHIAKDC----------------KDPKR--ERRQHCYTCGRLGHLARDCDRQK 108
Query: 241 NQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSREC 390
Q CY CG+ GH+ +DC Q+KCY C + GH++ C
Sbjct: 109 EQ-----KCYSCGKLGHIQKDCA----------QVKCYRCGEIGHVAINC 143
Score = 58.2 bits (139), Expect = 1e-08
Identities = 26/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+++++C + K+ +R C+ CG GH++R+C + Q+
Sbjct: 75 HIAKDCKDPKR----ERRQHCYTCGRLGHLARDCDR---------------------QKE 109
Query: 181 TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQ 312
+CY+C + GH+ ++C + + CY+CGE GH+A +C++
Sbjct: 110 QKCYSCGKLGHIQKDCAQVK--------CYRCGEIGHVAINCSK 145
Score = 38.9 bits (89), Expect = 0.008
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+++R+C K+ C++CG+ GH+ ++C Q
Sbjct: 99 HLARDCDRQKEQ-------KCYSCGKLGHIQKDCAQ------------------------ 127
Query: 181 TECYNCHETGHMSRECPKQR 240
+CY C E GH++ C K R
Sbjct: 128 VKCYRCGEIGHVAINCSKAR 147
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 106 bits (264), Expect = 4e-23
Identities = 56/141 (39%), Positives = 73/141 (51%), Gaps = 7/141 (4%)
Frame = +1
Query: 61 CFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSRECPKQR 240
C+NCGE+GH +REC + + + S+ Q T CY C GH+ R+CP
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEPQQEKT-CYACGTAGHLVRDCPSSP 77
Query: 241 N--QGSRNNGCYKCGENGHMARDCT----QEGGNDRQERQ-IKCYNCNQNGHMSRECPNG 399
N QG+ CYKCG GH+ARDC Q GG R + CY C GH +R+C G
Sbjct: 78 NPRQGAE---CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 400 QSDKKCYKCNKVGHMSRDCNE 462
KCY C K+GH S +C +
Sbjct: 135 V---KCYSCGKIGHRSFECQQ 152
Score = 105 bits (262), Expect = 7e-23
Identities = 54/159 (33%), Positives = 76/159 (47%), Gaps = 7/159 (4%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+ + ECTE Q+ C+ CG +GH+ R+CP + N ++
Sbjct: 46 HKASECTEP------QQEKTCYACGTAGHLVRDCPSSPNP-----------------RQG 82
Query: 181 TECYNCHETGHMSRECPKQRNQ------GSRNN-GCYKCGENGHMARDCTQEGGNDRQER 339
ECY C GH++R+C Q G R+N CY CG GH ARDCT
Sbjct: 83 AECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG-------- 134
Query: 340 QIKCYNCNQNGHMSRECPNGQSDKKCYKCNKVGHMSRDC 456
+KCY+C + GH S EC + CYKCN+ GH++ +C
Sbjct: 135 -VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 87.4 bits (215), Expect = 2e-17
Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +1
Query: 187 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 366
CYNC E GH +REC K + CY C + GH A +CT+ +++ CY C
Sbjct: 19 CYNCGENGHQARECTK-------GSICYNCNQTGHKASECTEP------QQEKTCYACGT 65
Query: 367 NGHMSRECP---NGQSDKKCYKCNKVGHMSRDCNE*G 468
GH+ R+CP N + +CYKC +VGH++RDC G
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNG 102
Score = 78.6 bits (192), Expect = 9e-15
Identities = 35/76 (46%), Positives = 41/76 (53%)
Frame = +1
Query: 229 PKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSD 408
P+ G R CY CGENGH AR+CT+ CYNCNQ GH + EC Q +
Sbjct: 10 PQTTRPGPR---CYNCGENGHQARECTKGS---------ICYNCNQTGHKASECTEPQQE 57
Query: 409 KKCYKCNKVGHMSRDC 456
K CY C GH+ RDC
Sbjct: 58 KTCYACGTAGHLVRDC 73
Score = 64.3 bits (155), Expect = 2e-10
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGA-CFNCGESGHMSRECPQNDNR-GDRRGGYERRSD------ 156
++ R+C S R GA C+ CG GH++R+C N + G R GG+ +
Sbjct: 68 HLVRDCP----SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGS 123
Query: 157 ---DRRGNQRSTECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCT 309
R +CY+C + GH S EC Q S CYKC + GH+A +CT
Sbjct: 124 YGHQARDCTMGVKCYSCGKIGHRSFEC----QQASDGQLCYKCNQPGHIAVNCT 173
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 94.4 bits (233), Expect = 2e-19
Identities = 55/178 (30%), Positives = 73/178 (41%), Gaps = 38/178 (21%)
Frame = +1
Query: 43 GQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSR 222
G+R+ CFNC + GH S +CP+ + R CYNC + GH SR
Sbjct: 253 GERNNNCFNCQQPGHRSNDCPEPKKEREPR-----------------VCYNCQQPGHNSR 295
Query: 223 ECPKQRNQ--------------------------------GSRNNGCYKCGENGHMARDC 306
+CP++R GS NNG G G
Sbjct: 296 DCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGNSN 355
Query: 307 ---TQEGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 462
+ GG DR ER C+NC Q GH S +CP + +++ CY C + GH SRDC E
Sbjct: 356 GFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 94.4 bits (233), Expect = 2e-19
Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Frame = +1
Query: 43 GQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHMSR 222
G+R+ CFNC + GH S +CP+ + R CYNC + GH SR
Sbjct: 367 GERNNNCFNCQQPGHRSNDCPEPKKEREPR-----------------VCYNCQQPGHNSR 409
Query: 223 ECPKQRNQGSRNNGC---YKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECP 393
+CP++R NG + G +G + GN+ + +KC+NC GH S ECP
Sbjct: 410 DCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECP 469
Query: 394 NGQSDKKCYKCNKVGHMSRDC 456
+ + C+ C + GH S +C
Sbjct: 470 --EPPRGCFNCGEQGHRSNEC 488
Score = 75.5 bits (184), Expect = 7e-14
Identities = 54/211 (25%), Positives = 79/211 (37%), Gaps = 57/211 (27%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+ S +C E KK + C+NC + GH SR+CP+ + R G+ S G
Sbjct: 267 HRSNDCPEPKKE---REPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGG 323
Query: 181 TECY-----------NCHETGHMSRECPKQRN----------QGSRNNGCYKCGENGHMA 297
+ N E+G S N +G RNN C+ C + GH +
Sbjct: 324 GTGFDSGLTNGFGSGNNGESGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRS 383
Query: 298 RDCTQEGGNDRQERQIK-CYNCNQNGHMSRECPNGQSDK--------------------- 411
DC + ++ER+ + CYNC Q GH SR+CP + +
Sbjct: 384 NDCPEP----KKEREPRVCYNCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGG 439
Query: 412 --------------KCYKCNKVGHMSRDCNE 462
KC+ C GH S +C E
Sbjct: 440 NAEGFGNNEERGPMKCFNCKGEGHRSAECPE 470
Score = 67.8 bits (164), Expect = 2e-11
Identities = 47/145 (32%), Positives = 61/145 (42%), Gaps = 3/145 (2%)
Frame = +1
Query: 37 GSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHM 216
GSG+ G F G++G N N G G G N HE+G
Sbjct: 169 GSGKAGGTGFGSGKAGGTG--FGGNSNSGSGFGS---------GLTNGFGSGNNHESGFG 217
Query: 217 SRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN 396
K G N+G G G+ + GG DR ER C+NC Q GH S +CP
Sbjct: 218 GG---KSGGFGGGNSGGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPE 274
Query: 397 GQSDKK---CYKCNKVGHMSRDCNE 462
+ +++ CY C + GH SRDC E
Sbjct: 275 PKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 36.2 bits (82), Expect = 0.049
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Frame = +1
Query: 37 GSGQRSG-------ACFNCGESGHMSRECP 105
G G RS CFNCGE GH S ECP
Sbjct: 460 GEGHRSAECPEPPRGCFNCGEQGHRSNECP 489
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 87.4 bits (215), Expect = 2e-17
Identities = 47/147 (31%), Positives = 65/147 (44%), Gaps = 7/147 (4%)
Frame = +1
Query: 37 GSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTECYNCHETGHM 216
G G+R+ CFNC + GH S +CP+ R + CYNC + GH
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEP-----------------RKEREPRVCYNCQQPGHT 194
Query: 217 SRECPKQRNQGSRNNGCY-------KCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGH 375
SREC ++R G + G N D GG +R +KC+NC GH
Sbjct: 195 SRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEER--GPMKCFNCKGEGH 252
Query: 376 MSRECPNGQSDKKCYKCNKVGHMSRDC 456
S ECP + + C+ C + GH S +C
Sbjct: 253 RSAECP--EPPRGCFNCGEQGHRSNEC 277
Score = 57.8 bits (138), Expect = 2e-08
Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 38/110 (34%)
Frame = +1
Query: 247 GSRNNGCYKCGENGHMARDCTQEGGNDRQERQIK-CYNCNQNGHMSRECP---------- 393
G RNN C+ C + GH + DC + R+ER+ + CYNC Q GH SREC
Sbjct: 154 GERNNNCFNCQQPGHRSSDCPEP----RKEREPRVCYNCQQPGHTSRECTEERKpreGRT 209
Query: 394 -----------NGQSD----------------KKCYKCNKVGHMSRDCNE 462
NG +D KC+ C GH S +C E
Sbjct: 210 GGFGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE 259
Score = 57.0 bits (136), Expect = 3e-08
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +1
Query: 313 EGGNDRQERQIKCYNCNQNGHMSRECPNGQSDKK---CYKCNKVGHMSRDCNE 462
EGG+ ER C+NC Q GH S +CP + +++ CY C + GH SR+C E
Sbjct: 148 EGGHGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 54.7 bits (130), Expect = 1e-07
Identities = 33/102 (32%), Positives = 44/102 (43%)
Frame = +1
Query: 1 YMSRECTENKKSGSGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRS 180
+ SRECTE +K G+ G G + + D G GG ER
Sbjct: 193 HTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGD--GGFGGGEER---------GP 241
Query: 181 TECYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDC 306
+C+NC GH S ECP+ GC+ CGE GH + +C
Sbjct: 242 MKCFNCKGEGHRSAECPEP------PRGCFNCGEQGHRSNEC 277
Score = 36.2 bits (82), Expect = 0.049
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Frame = +1
Query: 37 GSGQRSG-------ACFNCGESGHMSRECP 105
G G RS CFNCGE GH S ECP
Sbjct: 249 GEGHRSAECPEPPRGCFNCGEQGHRSNECP 278
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 74.7 bits (182), Expect = 1e-13
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 6/154 (3%)
Frame = +1
Query: 13 ECTENKKSG--SGQRSGACFNCGESGHMSRECPQNDNRGDRRGGYERRSDDRRGNQRSTE 186
E ++N++ G+R C NCGE GH+S+EC +
Sbjct: 554 EPSDNQRGNWDGGERPRGCHNCGEEGHISKECD-------------------KPKVPRFP 594
Query: 187 CYNCHETGHMSRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQ 366
C NC + GH + +C + R C CG GH A DC Q + + C NC Q
Sbjct: 595 CRNCEQLGHFASDCDQPR---VPRGPCRNCGIEGHFAVDCDQP-----KVPRGPCRNCGQ 646
Query: 367 NGHMSRECPNG----QSDKKCYKCNKVGHMSRDC 456
GH +++C N + + C +C + GH +C
Sbjct: 647 EGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 55.5 bits (132), Expect = 8e-08
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
Frame = +1
Query: 43 GQRSGACFNCGESGHMSRECPQNDNRG--DRRGGYERRSDDRRGNQRSTECYNCHETGHM 216
G+R + G + P G + GG + + G S+ N + G
Sbjct: 496 GKRDSGFGGPQDQGFGDTDAPSKSGLGSFNTGGGAVKSAFGAAGFGSSSNFGNGNTFGEP 555
Query: 217 SRECPKQRNQGSRNNGCYKCGENGHMARDCTQEGGNDRQERQIKCYNCNQNGHMSRECPN 396
S + G R GC+ CGE GH++++C + + + C NC Q GH + +C
Sbjct: 556 SDNQRGNWDGGERPRGCHNCGEEGHISKECDKP-----KVPRFPCRNCEQLGHFASDCDQ 610
Query: 397 GQSDK-KCYKCNKVGHMSRDCNE 462
+ + C C GH + DC++
Sbjct: 611 PRVPRGPCRNCGIEGHFAVDCDQ 633
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,276,975
Number of Sequences: 369166
Number of extensions: 1314080
Number of successful extensions: 6778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5731
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)