Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_I21
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY0|ECHB_MOUSE Trifunctional enzyme beta subunit, mit... 209 3e-54
sp|Q60587|ECHB_RAT Trifunctional enzyme beta subunit, mitoc... 208 6e-54
sp|O46629|ECHB_BOVIN Trifunctional enzyme beta subunit, mit... 207 1e-53
sp|Q5R1W7|ECHB_PANTR Trifunctional enzyme beta subunit, mit... 206 3e-53
sp|Q8HXX4|ECHB_MACFA Trifunctional enzyme beta subunit, mit... 206 3e-53
sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromo... 203 1e-52
sp|P76503|FADI_ECOLI 3-ketoacyl-CoA thiolase (Fatty acid ox... 116 3e-26
sp|P07871|THIKB_RAT 3-ketoacyl-CoA thiolase B, peroxisomal ... 78 9e-15
sp|P21775|THIKA_RAT 3-ketoacyl-CoA thiolase A, peroxisomal ... 78 9e-15
sp|P17764|THIL_RAT Acetyl-CoA acetyltransferase, mitochondr... 78 1e-14
>sp|Q99JY0|ECHB_MOUSE Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 209 bits (532), Expect = 3e-54
Identities = 102/141 (72%), Positives = 117/141 (82%)
Frame = +1
Query: 1 KAYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKA 180
KAYLRDFIYVSQDP DQLLLGP YATPK+L++ LT+ DI AFEFHEAF+GQILAN KA
Sbjct: 335 KAYLRDFIYVSQDPK-DQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKA 393
Query: 181 MDCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQF 360
MD D+F + YM R K GS PL++ N WGGSLS+GHPFGATG RLV AANRL K+ GQ+
Sbjct: 394 MDSDWFAQNYMGRKTKVGSPPLEKFNIWGGSLSLGHPFGATGCRLVMAAANRLRKDGGQY 453
Query: 361 ALVAACAAGGQGHAILIENYP 423
ALVAACAAGGQGHA+++E YP
Sbjct: 454 ALVAACAAGGQGHAMIVEAYP 474
>sp|Q60587|ECHB_RAT Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 208 bits (529), Expect = 6e-54
Identities = 101/141 (71%), Positives = 117/141 (82%)
Frame = +1
Query: 1 KAYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKA 180
KAYLRDFIYVSQDP DQLLLGP YATPK+L++ LT+ DI AFEFHEAF+GQILAN KA
Sbjct: 335 KAYLRDFIYVSQDPK-DQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKA 393
Query: 181 MDCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQF 360
MD D+F + YM R K G+ PL++ N WGGSLS+GHPFGATG RLV AANRL K+ GQ+
Sbjct: 394 MDSDWFAQNYMGRKTKVGAPPLEKFNIWGGSLSLGHPFGATGCRLVMAAANRLRKDGGQY 453
Query: 361 ALVAACAAGGQGHAILIENYP 423
ALVAACAAGGQGHA+++E YP
Sbjct: 454 ALVAACAAGGQGHAMIVEAYP 474
>sp|O46629|ECHB_BOVIN Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 207 bits (527), Expect = 1e-53
Identities = 101/141 (71%), Positives = 116/141 (82%)
Frame = +1
Query: 1 KAYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKA 180
KAYLRDF+YVSQDP DQLLLGP YATPK+L++ LT+ DI FEFHEAF+GQILANLKA
Sbjct: 335 KAYLRDFMYVSQDPK-DQLLLGPTYATPKVLEKAGLTMNDIDVFEFHEAFSGQILANLKA 393
Query: 181 MDCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQF 360
MD D+F + YM R AK G PL++ N WGGSLS+GHPFGATG RLV AANRL KE GQ+
Sbjct: 394 MDSDWFAQNYMGRKAKVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQY 453
Query: 361 ALVAACAAGGQGHAILIENYP 423
LVAACAAGGQGHA+++E YP
Sbjct: 454 GLVAACAAGGQGHAMIVEAYP 474
>sp|Q5R1W7|ECHB_PANTR Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
sp|P55084|ECHB_HUMAN Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 206 bits (523), Expect = 3e-53
Identities = 100/141 (70%), Positives = 115/141 (81%)
Frame = +1
Query: 1 KAYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKA 180
KAYLRDF+YVSQDP DQLLLGP YATPK+L++ LT+ DI AFEFHEAF+GQILAN KA
Sbjct: 335 KAYLRDFMYVSQDPK-DQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKA 393
Query: 181 MDCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQF 360
MD D+F + YM R K G PL++ N WGGSLS+GHPFGATG RLV AANRL KE GQ+
Sbjct: 394 MDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQY 453
Query: 361 ALVAACAAGGQGHAILIENYP 423
LVAACAAGGQGHA+++E YP
Sbjct: 454 GLVAACAAGGQGHAMIVEAYP 474
>sp|Q8HXX4|ECHB_MACFA Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 206 bits (523), Expect = 3e-53
Identities = 100/141 (70%), Positives = 115/141 (81%)
Frame = +1
Query: 1 KAYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKA 180
KAYLRDF+YVSQDP DQLLLGP YATPK+L++ LT+ DI AFEFHEAF+GQILAN KA
Sbjct: 335 KAYLRDFMYVSQDPK-DQLLLGPTYATPKVLEKAGLTMNDIDAFEFHEAFSGQILANFKA 393
Query: 181 MDCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQF 360
MD D+F + YM R K G PL++ N WGGSLS+GHPFGATG RLV AANRL KE GQ+
Sbjct: 394 MDSDWFAENYMGRKTKVGLPPLEKFNNWGGSLSLGHPFGATGCRLVMAAANRLRKEGGQY 453
Query: 361 ALVAACAAGGQGHAILIENYP 423
LVAACAAGGQGHA+++E YP
Sbjct: 454 GLVAACAAGGQGHAMIVEAYP 474
>sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromosome III
Length = 448
Score = 203 bits (517), Expect = 1e-52
Identities = 97/140 (69%), Positives = 116/140 (82%)
Frame = +1
Query: 1 KAYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKA 180
KAYLRD++YV+QDP DQLLL PAY PK+LD+ LTLKD+ FE HEAFAGQ+LANL A
Sbjct: 308 KAYLRDYLYVAQDPK-DQLLLSPAYVIPKLLDKAGLTLKDVDVFEIHEAFAGQVLANLNA 366
Query: 181 MDCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQF 360
MD D+FCKE MKR K+G +P+D+LN WGGSLSIGHPFGATGVRL T +A+RL +EKGQ+
Sbjct: 367 MDSDYFCKEQMKRSGKFGRVPMDKLNLWGGSLSIGHPFGATGVRLATHSAHRLKEEKGQY 426
Query: 361 ALVAACAAGGQGHAILIENY 420
A++AACAAGG G +LIE Y
Sbjct: 427 AVIAACAAGGHGVGMLIEAY 446
>sp|P76503|FADI_ECOLI 3-ketoacyl-CoA thiolase (Fatty acid oxidation complex beta subunit)
(Beta-ketothiolase) (Acetyl-CoA acyltransferase)
(Acyl-CoA ligase) (ACSs)
Length = 436
Score = 116 bits (290), Expect = 3e-26
Identities = 57/136 (41%), Positives = 85/136 (62%)
Frame = +1
Query: 7 YLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKAMD 186
YLR + + + D + +LLGPA++TP L+R LT+ D+T + HEAFA Q LAN++ +
Sbjct: 300 YLRSYAFTAID-VWQDMLLGPAWSTPLALERAGLTMSDLTLIDMHEAFAAQTLANIQLLG 358
Query: 187 CDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQFAL 366
+ F +E + R G + + N GGS++ GHPF ATG R++T + L + G F L
Sbjct: 359 SERFAREALGRAHATGEVDDSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGGFGL 418
Query: 367 VAACAAGGQGHAILIE 414
V ACAAGG G A+++E
Sbjct: 419 VTACAAGGLGAAMVLE 434
>sp|P07871|THIKB_RAT 3-ketoacyl-CoA thiolase B, peroxisomal precursor (Beta-ketothiolase
B) (Acetyl-CoA acyltransferase B) (Peroxisomal
3-oxoacyl-CoA thiolase B)
Length = 424
Score = 78.2 bits (191), Expect = 9e-15
Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Frame = +1
Query: 10 LRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKAMDC 189
LR + V P D + +GPAYA P L + LT+ DI FE +EAFA Q L
Sbjct: 304 LRSYAVVGVPP--DIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAL-------- 353
Query: 190 DFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQ--FA 363
+C E + +P +++N GG++++GHP G TG R V T N L K +G+ +
Sbjct: 354 --YCVEKL-------GIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNEL-KRRGRRAYG 403
Query: 364 LVAACAAGGQGHAILIENYP 423
+V+ C G G A + E YP
Sbjct: 404 VVSMCIGTGMGAAAVFE-YP 422
>sp|P21775|THIKA_RAT 3-ketoacyl-CoA thiolase A, peroxisomal precursor (Beta-ketothiolase
A) (Acetyl-CoA acyltransferase A) (Peroxisomal
3-oxoacyl-CoA thiolase A)
Length = 424
Score = 78.2 bits (191), Expect = 9e-15
Identities = 51/140 (36%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Frame = +1
Query: 10 LRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKAMDC 189
LR + V P D + +GPAYA P L + LT+ DI FE +EAFA Q L
Sbjct: 304 LRSYAVVGVPP--DIMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFASQAL-------- 353
Query: 190 DFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQ--FA 363
+C E + +P +++N GG++++GHP G TG R V T N L K +G+ +
Sbjct: 354 --YCVEKL-------GIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNEL-KRRGRRAYG 403
Query: 364 LVAACAAGGQGHAILIENYP 423
+V+ C G G A + E YP
Sbjct: 404 VVSMCIGTGMGAAAVFE-YP 422
>sp|P17764|THIL_RAT Acetyl-CoA acetyltransferase, mitochondrial precursor
(Acetoacetyl-CoA thiolase)
Length = 424
Score = 77.8 bits (190), Expect = 1e-14
Identities = 50/137 (36%), Positives = 73/137 (53%)
Frame = +1
Query: 4 AYLRDFIYVSQDPICDQLLLGPAYATPKILDRNKLTLKDITAFEFHEAFAGQILANLKAM 183
A + F + DPI L PAYA PK+L L +DI +E +EAF+ +LAN+K +
Sbjct: 307 ARIAAFADAAVDPI--DFPLAPAYAVPKVLKYAGLKKEDIAMWEVNEAFSVVVLANIKML 364
Query: 184 DCDFFCKEYMKRPAKYGSLPLDRLNTWGGSLSIGHPFGATGVRLVTTAANRLIKEKGQFA 363
+ D P K +N GG++S+GHP G +G R+V A+ L ++G+F
Sbjct: 365 EID---------PQK--------VNVHGGAVSLGHPIGMSGARIVVHLAHAL--KQGEFG 405
Query: 364 LVAACAAGGQGHAILIE 414
L + C GG A+LIE
Sbjct: 406 LASICNGGGGASAVLIE 422
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,899,979
Number of Sequences: 369166
Number of extensions: 934035
Number of successful extensions: 2358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2292
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)