Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_I12
(789 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)... 39 0.016
sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly... 31 3.4
sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly... 31 3.4
sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A... 31 3.4
sp|P23011|RBL_XANFL Ribulose bisphosphate carboxylase large... 30 5.8
sp|Q02446|SP4_HUMAN Transcription factor Sp4 (SPR-1) 30 9.9
sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim)... 30 9.9
sp|Q62445|SP4_MOUSE Transcription factor Sp4 30 9.9
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
Length = 634
Score = 38.9 bits (89), Expect = 0.016
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Frame = +2
Query: 530 QNRNARPITGNVQLNQPRPQYN--IVANGRQAGNMMYQY-------PI-QDNQTMMNPDQ 679
+N AR ITG Q P Q +A G Q Y+Y P+ Q +QT P Q
Sbjct: 488 RNTGARAITGQ-QTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQ 546
Query: 680 MKMPDIESQIDLSTTSKIANADSMEAKQLLGEKIYP 787
++ + E I S +ANA E KQ+LGE++YP
Sbjct: 547 LQGKNSEKLI----ASLLANAKPQEQKQILGERLYP 578
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 31.2 bits (69), Expect = 3.4
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +2
Query: 584 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 763
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 764 LLGEKIYP 787
+LGE+++P
Sbjct: 561 MLGERLFP 568
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 31.2 bits (69), Expect = 3.4
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +2
Query: 584 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 763
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 764 LLGEKIYP 787
+LGE+++P
Sbjct: 561 MLGERLFP 568
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1)
Length = 636
Score = 31.2 bits (69), Expect = 3.4
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +2
Query: 584 PQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQMKMPDIESQIDLSTTSKIANADSMEAKQ 763
PQY A R N Q TM P ++ Q L T S +A+A E KQ
Sbjct: 509 PQYKYAAGVR---NPQQHLNAQPQVTMQQP----AVHVQGQEPL-TASMLASAPPQEQKQ 560
Query: 764 LLGEKIYP 787
+LGE+++P
Sbjct: 561 MLGERLFP 568
>sp|P23011|RBL_XANFL Ribulose bisphosphate carboxylase large chain (RuBisCO large
subunit)
Length = 488
Score = 30.4 bits (67), Expect = 5.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -3
Query: 415 VLGPSALQNIARSCHEWSLWIWIHKVHHHAWIKNSGRTISF 293
++G +A+Q+I+ C E + + +H+ H + + G ISF
Sbjct: 275 IVGWTAIQSISNWCRENDMLLHMHRAGHGTYTRQKGHGISF 315
>sp|Q02446|SP4_HUMAN Transcription factor Sp4 (SPR-1)
Length = 784
Score = 29.6 bits (65), Expect = 9.9
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 530 QNRNARPITGNVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQ--MKMPDIES 703
+N N +P T Q +QP P + A + G Q +++P Q +++ +
Sbjct: 29 ENNNKKPKTSGSQDSQPSPLALLAATCSKIGTPGENQATGQQQIIIDPSQGLVQLQNQPQ 88
Query: 704 QIDLSTTSKIANA 742
Q++L TT NA
Sbjct: 89 QLELVTTQLAGNA 101
>sp|Q22366|RIM_CAEEL Rab-3 interacting molecule unc-10 (Rim) (Uncoordinated protein 10)
Length = 1563
Score = 29.6 bits (65), Expect = 9.9
Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Frame = +2
Query: 428 QPRNIGMPANQNIMMAGMPQNQQRRNIIVDPIISQNRNARPITGNVQLNQPRPQYNIVAN 607
QPR +GM N N Q N P + N+N Q+ P N V N
Sbjct: 181 QPRGMGMQPNHNQTQQNFMNQNQNSN--QHPNQNHNQN--------QMQNPHQNQNHVQN 230
Query: 608 GRQAGN--------MMYQYPIQDNQ----TMMNPDQ 679
Q N M Q P+ NQ MN +Q
Sbjct: 231 NHQGANNHQQNNRRAMQQQPMSQNQANQINQMNQNQ 266
>sp|Q62445|SP4_MOUSE Transcription factor Sp4
Length = 782
Score = 29.6 bits (65), Expect = 9.9
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 530 QNRNARPITGNVQLNQPRPQYNIVANGRQAGNMMYQYPIQDNQTMMNPDQ--MKMPDIES 703
+N N +P T Q +QP P + A + G Q +++P Q +++ +
Sbjct: 27 ENNNKKPKTSGSQDSQPSPLALLAATCSKIGTPGENQATGQQQIIIDPSQGLVQLQNQPQ 86
Query: 704 QIDLSTTSKIANA 742
Q++L TT NA
Sbjct: 87 QLELVTTQLAGNA 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,858,809
Number of Sequences: 369166
Number of extensions: 1966169
Number of successful extensions: 4936
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)