Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_I07
(882 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48643|TCPE_HUMAN T-complex protein 1, epsilon subunit (... 397 e-110
sp|Q5RF02|TCPE_PONPY T-complex protein 1, epsilon subunit (... 395 e-110
sp|P80316|TCPE_MOUSE T-complex protein 1, epsilon subunit (... 395 e-109
sp|P47209|TCPE_CAEEL T-complex protein 1, epsilon subunit (... 363 e-100
sp|Q9UTM4|TCPE_SCHPO T-complex protein 1, epsilon subunit (... 362 e-99
sp|P54411|TCPE2_AVESA T-complex protein 1, epsilon subunit ... 349 5e-96
sp|O04450|TCPE_ARATH T-complex protein 1, epsilon subunit (... 349 7e-96
sp|P40412|TCPE1_AVESA T-complex protein 1, epsilon subunit ... 345 7e-95
sp|P40413|TCPE_YEAST T-complex protein 1, epsilon subunit (... 317 4e-86
sp|P48425|THSB_THEAC Thermosome beta subunit (Thermosome su... 202 1e-51
>sp|P48643|TCPE_HUMAN T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 541
Score = 397 bits (1019), Expect = e-110
Identities = 196/286 (68%), Positives = 239/286 (83%)
Frame = +1
Query: 25 LKLI*SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKL 204
L+ + SHIMAAK V+N +RTSLGP GLDK+MV+ D D+TVTNDG TI+ MMDV+H+IAKL
Sbjct: 31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 90
Query: 205 MVELSKSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDK 384
MVELSKSQDDEIGDGTTGVVVLAG+LLE+AEQLLDRGIHPIRI+DGYE AA++ ++ LDK
Sbjct: 91 MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDK 150
Query: 385 ISDTFVFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIK 564
ISD+ + +++ EPLIQTA TTLGSK+VN CHRQ AE+AV A+L+VAD+ER+DVDFELIK
Sbjct: 151 ISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210
Query: 565 VDGKVGGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVET 744
V+GKVGG L D+ L+KGVIVDKDFSHPQMPK ++DAKIAILTC FEPPKPKTKH L V +
Sbjct: 211 VEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTS 270
Query: 745 VKDFENLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
V+D++ L KYE + + + ++K + GFDDEANHLL Q
Sbjct: 271 VEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQ 316
>sp|Q5RF02|TCPE_PONPY T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 541
Score = 395 bits (1015), Expect = e-110
Identities = 195/286 (68%), Positives = 239/286 (83%)
Frame = +1
Query: 25 LKLI*SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKL 204
L+ + SHIMAAK V+N +RTSLGP GLDK+MV+ D D+TVTNDG TI+ MMDV+H+IAKL
Sbjct: 31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKL 90
Query: 205 MVELSKSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDK 384
MVELSKSQDDEIGDGTTGVVVLAG+LLE+AEQLLDRGIHPIRI+DGYE AA++ ++ LDK
Sbjct: 91 MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDK 150
Query: 385 ISDTFVFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIK 564
ISD+ + +++ EPLIQTA TTLGSK+VN CHRQ AE+AV A+L+VAD+ER+DVDFELIK
Sbjct: 151 ISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210
Query: 565 VDGKVGGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVET 744
V+GKVGG L D+ L+KGVIVDKDFSHP+MPK ++DAKIAILTC FEPPKPKTKH L V +
Sbjct: 211 VEGKVGGRLEDTKLIKGVIVDKDFSHPRMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTS 270
Query: 745 VKDFENLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
V+D++ L KYE + + + ++K + GFDDEANHLL Q
Sbjct: 271 VEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQ 316
>sp|P80316|TCPE_MOUSE T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 541
Score = 395 bits (1014), Expect = e-109
Identities = 195/286 (68%), Positives = 235/286 (82%)
Frame = +1
Query: 25 LKLI*SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKL 204
L+ + SHIMAAK V+N +RTSLGP GLDK+MV+ D D+T+TNDG TI+ MMDV+H+IAKL
Sbjct: 31 LEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKL 90
Query: 205 MVELSKSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDK 384
MVELSKSQDDEIGDGTTGVVVLAG+LLE+AEQLLDRGIHPIRI+DGYE AA++ + LDK
Sbjct: 91 MVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDK 150
Query: 385 ISDTFVFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIK 564
ISD + + N EPLIQTA TTLGSK++N CHRQ AE+AV A+L+VAD+ER+DVDFELIK
Sbjct: 151 ISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTVADMERRDVDFELIK 210
Query: 565 VDGKVGGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVET 744
V+GKVGG L D+ L+KGVIVDKDFSHPQMPK + DAKIAILTC FEPPKPKTKH L V +
Sbjct: 211 VEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMS 270
Query: 745 VKDFENLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
V+D++ L KYE + + + ++K + GFDDEANHLL Q
Sbjct: 271 VEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQ 316
>sp|P47209|TCPE_CAEEL T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 542
Score = 363 bits (931), Expect = e-100
Identities = 178/279 (63%), Positives = 227/279 (81%)
Frame = +1
Query: 40 SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKLMVELS 219
SHI+AA+ V+N LRTSLGP+GLDK++V+PD D+T+TNDG TIME MDV+H +AKLMVELS
Sbjct: 37 SHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELS 96
Query: 220 KSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDKISDTF 399
KSQD EIGDGTTGVVVLAG+LLE+AE+L+DRGIHPI+I+DG+++A K L+ LD ISD F
Sbjct: 97 KSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSISDKF 156
Query: 400 VFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIKVDGKV 579
+EN+E L++TA T+LGSKIVN+ RQFAE+AV A+LSVADIE KDV+FE+IK++GKV
Sbjct: 157 --PVENRERLVETAQTSLGSKIVNRSLRQFAEIAVDAVLSVADIESKDVNFEMIKMEGKV 214
Query: 580 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 759
GG L D+ILVKG+++DK SHPQMPK +K+AK+AILTC FEPPKPKTKH L + + +DF+
Sbjct: 215 GGRLEDTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFK 274
Query: 760 NLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLL 876
L YE + + ++K + GFDDEANHLL
Sbjct: 275 ALRDYERETFETMIRQVKESGATLAICQWGFDDEANHLL 313
>sp|Q9UTM4|TCPE_SCHPO T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 546
Score = 362 bits (928), Expect = e-99
Identities = 181/281 (64%), Positives = 224/281 (79%)
Frame = +1
Query: 40 SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKLMVELS 219
SHI+A KTV+NI+RTSLGP+GLDKI+++PD +ITVTNDG TI++ M+VEH+IAKL+V+LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 220 KSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDKISDTF 399
KSQDDEIGDGTTGVVVLAG+LLEQAE L+D+GIHPIRI+DGYE A ++ + LD ISD
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 400 VFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIKVDGKV 579
FS EN L ++A T+LGSK+V+K H FA +AV A+LSVAD++RKDVDFELIKVDGKV
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKV 217
Query: 580 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 759
GG++ D+ LVKGV+VDKD SHPQMP I++AKIAILTC FEPPKPKTKH L + +V +FE
Sbjct: 218 GGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFE 277
Query: 760 NLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
L YE + + + +K GFDDEANHLL Q
Sbjct: 278 ALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEANHLLLQ 318
>sp|P54411|TCPE2_AVESA T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36)
Length = 535
Score = 349 bits (896), Expect = 5e-96
Identities = 173/281 (61%), Positives = 225/281 (80%)
Frame = +1
Query: 40 SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKLMVELS 219
++I A K+V+ ILRTSLGPKG+DK++ +PD D+T+TNDG TI+E+MDV+++IAKLMVELS
Sbjct: 32 ANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELS 91
Query: 220 KSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDKISDTF 399
+SQD +IGDGTTGVVV+AGSLLEQAE+LL+RGIHPIR+++GYEMA+++ +D L+ IS +
Sbjct: 92 RSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKY 151
Query: 400 VFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIKVDGKV 579
FS + EPL+QT MTTL SKIV++C R AE+AV A+L+VAD+ERKDV+ +LIKV+GKV
Sbjct: 152 EFSATDIEPLVQTCMTTLSSKIVSRCKRALAEIAVKAVLAVADLERKDVNLDLIKVEGKV 211
Query: 580 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 759
GG L D+ LV+G+IVDKD SHPQMPK I+DA IAILTC FEPPKPKTKH + ++TV+ F+
Sbjct: 212 GGKLEDTELVQGIIVDKDMSHPQMPKRIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQ 271
Query: 760 NLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
L E + + K K + GFDDEANHLL Q
Sbjct: 272 TLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQ 312
>sp|O04450|TCPE_ARATH T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 535
Score = 349 bits (895), Expect = 7e-96
Identities = 171/279 (61%), Positives = 221/279 (79%)
Frame = +1
Query: 40 SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKLMVELS 219
++I A K V+ ILR+SLGPKG+DK++ PD DIT+TNDG TI+E MDV+++IAKLMVELS
Sbjct: 32 ANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELS 91
Query: 220 KSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDKISDTF 399
+SQD EIGDGTTGVVV+AG+LLEQAE+ LDRGIHPIRI++GYEMA+++ ++ L++I+ F
Sbjct: 92 RSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKF 151
Query: 400 VFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIKVDGKV 579
F + N EPL+QT MTTL SKIVN+C R AE+AV A+L+VAD+ER+DV+ +LIKV+GKV
Sbjct: 152 EFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKV 211
Query: 580 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 759
GG L D+ L+ G+++DKD SHPQMPK I+DA IAILTC FEPPKPKTKH + ++TV+ FE
Sbjct: 212 GGKLEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFE 271
Query: 760 NLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLL 876
L K E + + K K + GFDDEANHLL
Sbjct: 272 TLRKQEQQYFDEMVQKCKDVGATLVICQWGFDDEANHLL 310
>sp|P40412|TCPE1_AVESA T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K19)
Length = 535
Score = 345 bits (886), Expect = 7e-95
Identities = 170/281 (60%), Positives = 224/281 (79%)
Frame = +1
Query: 40 SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKLMVELS 219
++I AAK ++ ILRTSLGPKG+DK++ +PD D+T+TNDG TI+E+MDV+++IAKL+VELS
Sbjct: 32 ANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELS 91
Query: 220 KSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDKISDTF 399
+SQD +IGDGTTGVVV+AG+LLEQAE+LL+RGIHPIR+++GYEMA+++ +D L+ IS +
Sbjct: 92 RSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKY 151
Query: 400 VFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIKVDGKV 579
FS + EPL+QT MTTL SKIV++C R AE++V A+L+VAD+ERKDV+ +LIKV+GKV
Sbjct: 152 EFSATDIEPLVQTCMTTLSSKIVSRCKRALAEISVKAVLAVADLERKDVNLDLIKVEGKV 211
Query: 580 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 759
GG L D+ LV+G+IVDKD SHPQMPK I DA IAILTC FEPPKPKTKH + ++TV+ F+
Sbjct: 212 GGKLEDTELVEGIIVDKDMSHPQMPKRIYDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQ 271
Query: 760 NLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
L E + + K K + GFDDEANHLL Q
Sbjct: 272 TLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQ 312
>sp|P40413|TCPE_YEAST T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 551
Score = 317 bits (811), Expect = 4e-86
Identities = 158/289 (54%), Positives = 222/289 (76%), Gaps = 8/289 (2%)
Frame = +1
Query: 40 SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVEHEIAKLMVELS 219
SHI+AA++V++I++TSLGP+GLDKI+++PD +IT+TNDG TI+ M++++EIAKL+V+LS
Sbjct: 38 SHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLS 97
Query: 220 KSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLCLDELDKISDTF 399
KSQDDEIGDGTTGVVVLA +LL+QA +L+ +GIHPI+I++G++ AAKL + +L++ D
Sbjct: 98 KSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDI 157
Query: 400 VFSLEN--KEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIERKDVDFELIKVDG 573
S + ++ L++ A T+LGSKIV+K H +FAEMAV A+++V D +RKDVDF+LIK+ G
Sbjct: 158 SASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIKMQG 217
Query: 574 KVGGTLSDSILVKGVIVDKDFSHPQMPKSI------KDAKIAILTCAFEPPKPKTKHNLY 735
+VGG++SDS L+ GVI+DKDFSHPQMPK + K+AILTC FEPPKPKTKH L
Sbjct: 218 RVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLD 277
Query: 736 VETVKDFENLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLLYQ 882
+ +V++++ L YE D + + +K GFDDEANHLL Q
Sbjct: 278 ISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQ 326
>sp|P48425|THSB_THEAC Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 543
Score = 202 bits (513), Expect = 1e-51
Identities = 117/292 (40%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Frame = +1
Query: 7 GKDWLELKLI*SHIMAAKTVSNILRTSLGPKGLDKIMVNPDNDITVTNDGRTIMEMMDVE 186
GKD ++ +I AA +SN +R+SLGP+G+DK++V+ DI +TNDG TI++ MDVE
Sbjct: 19 GKDAMK-----ENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVE 73
Query: 187 HEIAKLMVELSKSQDDEIGDGTTGVVVLAGSLLEQAEQLLDRGIHPIRISDGYEMAAKLC 366
H AK+MVE+SK+QD +GDGTT V++AG LL+QA+ L+++ +HP IS+GY MA++
Sbjct: 74 HPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEA 133
Query: 367 LDELDKISDTFVFSLENKEPLIQTAMTTLGSKIVNKCHRQFAEMAVGAILSVADIE--RK 540
+D+IS + K L++ A T+L SK + + AE++ A+ SVA++ +
Sbjct: 134 KRVIDEISTK--IGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKY 191
Query: 541 DVDFELIKVDGKVGGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKT 720
VDF+ I+V K GG + D+ L+ G+IVDK+ HP MP +KDAKIA+L E KP+
Sbjct: 192 YVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEF 251
Query: 721 KHNLYVETVKDFENLAKYEHDNSLKWLIKLKHLVLI*SFVSGGFDDEANHLL 876
NL +E + E + + + K+K + G DD A H L
Sbjct: 252 DTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYL 303
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,058,080
Number of Sequences: 369166
Number of extensions: 1678821
Number of successful extensions: 5642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5177
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)