Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_I05
(758 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62261|SPTB2_MOUSE Spectrin beta chain, brain 1 (Spectri... 64 4e-10
sp|Q01082|SPTB2_HUMAN Spectrin beta chain, brain 1 (Spectri... 64 6e-10
sp|O15020|SPTN2_HUMAN Spectrin beta chain, brain 2 (Spectri... 64 6e-10
sp|Q9QWN8|SPTN2_RAT Spectrin beta chain, brain 2 (Spectrin,... 64 6e-10
sp|Q00963|SPTCB_DROME Spectrin beta chain 59 2e-08
sp|Q9H254|SPTN4_HUMAN Spectrin beta chain, brain 3 (Spectri... 49 1e-05
sp|Q9NYI0|EFA6R_HUMAN Pleckstrin and Sec7 domain containing... 40 0.005
sp|Q92349|YDH4_SCHPO Hypothetical protein C6G9.04 in chromo... 40 0.009
sp|P91621|SIF1_DROME Still life protein type 1 (SIF type 1) 37 0.058
sp|P91620|SIF2_DROME Still life protein type 2 (SIF type 2) 37 0.058
>sp|Q62261|SPTB2_MOUSE Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta chain 1)
(Beta-II spectrin) (Fodrin beta chain)
Length = 2363
Score = 63.9 bits (154), Expect = 4e-10
Identities = 30/68 (44%), Positives = 42/68 (61%)
Frame = +1
Query: 7 YHHESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNNATGG 186
YH E P+ + A A DY K+ +VF+LRL +G EYLFQAK + EMN WI +++A
Sbjct: 2248 YHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSAISS 2307
Query: 187 DSDNATRS 210
D + + S
Sbjct: 2308 DKHDTSAS 2315
>sp|Q01082|SPTB2_HUMAN Spectrin beta chain, brain 1 (Spectrin, non-erythroid beta chain 1)
(Beta-II spectrin) (Fodrin beta chain)
Length = 2364
Score = 63.5 bits (153), Expect = 6e-10
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = +1
Query: 7 YHHESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNNATGG 186
YH E P+ + A A DY K+ +VF+LRL +G EYLFQAK + EMN WI +++A
Sbjct: 2249 YHSEVPVSLKEAVCEVALDYKKKKHVFKLRLNDGNEYLFQAKDDEEMNTWIQAISSAISS 2308
Query: 187 DSDNATRS 210
D + S
Sbjct: 2309 DKHEVSAS 2316
>sp|O15020|SPTN2_HUMAN Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta chain 2)
(Beta-III spectrin)
Length = 2390
Score = 63.5 bits (153), Expect = 6e-10
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 7 YHHESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNN--AT 180
YH E P+ +A AQ + A DY KR +VF+L L +G EYLFQAK EAEM+ W+ +N AT
Sbjct: 2270 YHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAT 2329
Query: 181 GGDSDNATRSHTLPS 225
+ +PS
Sbjct: 2330 ASSASGEPEEPVVPS 2344
>sp|Q9QWN8|SPTN2_RAT Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta chain 2)
(Beta-III spectrin) (SPNB-3) (Beta SpIII sigma 1)
(Spectrin-like protein GTRAP41)
Length = 2388
Score = 63.5 bits (153), Expect = 6e-10
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Frame = +1
Query: 7 YHHESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNN--AT 180
YH E P+ +A AQ + A DY KR +VF+L L +G EYLFQAK EAEM+ W+ +N AT
Sbjct: 2270 YHGEVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAT 2329
Query: 181 GGDSDNATRSHTLPS 225
+ +PS
Sbjct: 2330 ASSASGEPEEPVVPS 2344
>sp|Q00963|SPTCB_DROME Spectrin beta chain
Length = 2291
Score = 58.5 bits (140), Expect = 2e-08
Identities = 31/97 (31%), Positives = 51/97 (52%)
Frame = +1
Query: 7 YHHESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNNATGG 186
+ E + A + A+DYTK+ +V R++L NG +L QA + EM++W+T L +
Sbjct: 2201 FRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS 2260
Query: 187 DSDNATRSHTLPSQQXXXXXXXXXXXXKKKFFTLGRK 297
+ A+RS TLP+ ++ FFTL +K
Sbjct: 2261 TAVAASRSQTLPATS------QKDEPKRRSFFTLKKK 2291
>sp|Q9H254|SPTN4_HUMAN Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3)
(Beta-IV spectrin)
Length = 2564
Score = 48.9 bits (115), Expect = 1e-05
Identities = 25/70 (35%), Positives = 40/70 (57%)
Frame = +1
Query: 16 ESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNNATGGDSD 195
E L + A A+DY K+ +VF+L+ +G E+L QAK E EMN W+ + ++ ++
Sbjct: 2472 EPLLSLHKATSEVASDYKKKKHVFKLQTQDGSEFLLQAKDEEEMNGWLEAVASSVAEHAE 2531
Query: 196 NATRSHTLPS 225
A TLP+
Sbjct: 2532 IARWGQTLPT 2541
>sp|Q9NYI0|EFA6R_HUMAN Pleckstrin and Sec7 domain containing protein 3 (Exchange factor
for ADP-ribosylation factor guanine nucleotide factor 6)
(Hepatocellular carcinoma-associated antigen 67)
Length = 534
Score = 40.4 bits (93), Expect = 0.005
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +1
Query: 16 ESPLQIAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLN 171
++ + + A + A DY K+ NVF+L+ + LFQ +S EM WI K+N
Sbjct: 329 KNAVSVHHALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKIN 380
>sp|Q92349|YDH4_SCHPO Hypothetical protein C6G9.04 in chromosome I
Length = 1318
Score = 39.7 bits (91), Expect = 0.009
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 10 HHESPLQ--IAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLN 171
H E LQ +A + P+ + + R NVF L +P YLF+A S MNEWI LN
Sbjct: 1100 HREFGLQSCLASPNLPPSIN-SNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLN 1154
>sp|P91621|SIF1_DROME Still life protein type 1 (SIF type 1)
Length = 2064
Score = 37.0 bits (84), Expect = 0.058
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 31 IAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNNA 177
+ GA + P ++ KR +F L G YLFQA + E+ W+ +++A
Sbjct: 905 VDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 953
>sp|P91620|SIF2_DROME Still life protein type 2 (SIF type 2)
Length = 2044
Score = 37.0 bits (84), Expect = 0.058
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 31 IAGAQVAPAADYTKRINVFRLRLPNGGEYLFQAKSEAEMNEWITKLNNA 177
+ GA + P ++ KR +F L G YLFQA + E+ W+ +++A
Sbjct: 885 VDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSA 933
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,859,535
Number of Sequences: 369166
Number of extensions: 1316899
Number of successful extensions: 2709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2709
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)