Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H21
(707 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 97 3e-20
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 97 3e-20
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 86 7e-17
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 86 1e-16
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 83 8e-16
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 82 1e-15
sp|Q8BFR6|ZFAN1_MOUSE AN1-type zinc finger protein 1 33 0.74
sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated p... 33 0.74
sp|Q8TCF1|ZFAN1_HUMAN AN1-type zinc finger protein 1 31 3.7
sp|Q8I8U6|FEM3_CAEBR Sex-determination protein fem-3 (Cb-FE... 31 3.7
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 97.4 bits (241), Expect = 3e-20
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +2
Query: 302 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 481
KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK +A IRK NP +V+ K
Sbjct: 150 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEK 209
Query: 482 VAKI 493
+ +I
Sbjct: 210 IQRI 213
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 97.4 bits (241), Expect = 3e-20
Identities = 40/64 (62%), Positives = 49/64 (76%)
Frame = +2
Query: 302 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 481
KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK +A IRK NP +V+ K
Sbjct: 150 KKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEK 209
Query: 482 VAKI 493
+ +I
Sbjct: 210 IQRI 213
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 86.3 bits (212), Expect = 7e-17
Identities = 35/64 (54%), Positives = 45/64 (70%)
Frame = +2
Query: 302 KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNK 481
+ NRC +CRK+VGLTGF CRCG FC +HRY + H CTFD+K I KANP +++ K
Sbjct: 98 RPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAK 157
Query: 482 VAKI 493
+ KI
Sbjct: 158 LQKI 161
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 85.9 bits (211), Expect = 1e-16
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +2
Query: 281 VASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKAN 460
VA S+V NRC CRK+VGLTGF CRCG +FC HRYSD H C++DYK A +AI + N
Sbjct: 96 VAKTSAV--NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDN 153
Query: 461 PRIVSNKVAK 490
P + + K+ +
Sbjct: 154 PVVRAAKIVR 163
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 82.8 bits (203), Expect = 8e-16
Identities = 35/89 (39%), Positives = 53/89 (59%)
Frame = +2
Query: 227 IVTGDTNKSDISNSETNSVASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSH 406
+VT + + ++ + + S NRC C KKVG+ GF C+CG FC +HRY + H
Sbjct: 87 VVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKH 146
Query: 407 SCTFDYKVDAENAIRKANPRIVSNKVAKI 493
C+FD+K +AI KANP + ++KV +I
Sbjct: 147 ECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 82.0 bits (201), Expect = 1e-15
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +2
Query: 230 VTGDTNKSDISNSETNSVASASSVKKN--RCQLCRKKVGLTGFACRCGGMFCSAHRYSDS 403
V G + S + ++ A K RC C KKVG+TGF CRCG FC HRY +S
Sbjct: 79 VLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPES 138
Query: 404 HSCTFDYKVDAENAIRKANPRIVSNKVAKI 493
H C FD+K A AI KANP + ++KV +I
Sbjct: 139 HECQFDFKGVAREAIAKANPVVKADKVDRI 168
>sp|Q8BFR6|ZFAN1_MOUSE AN1-type zinc finger protein 1
Length = 268
Score = 33.1 bits (74), Expect = 0.74
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 317 QLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCT 415
Q CR++ L C G+FC HR DSH C+
Sbjct: 13 QHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCS 45
>sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated protein VPS27
Length = 622
Score = 33.1 bits (74), Expect = 0.74
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = +2
Query: 248 KSDISNSET---NSVASASSVKKNRCQLCRKKVGLTG--FACR-CGGMFCSAH 388
K +SNS T +S A + + C +C KK L CR CGG+FC H
Sbjct: 151 KLTLSNSPTAMFDSKTPADWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEH 203
>sp|Q8TCF1|ZFAN1_HUMAN AN1-type zinc finger protein 1
Length = 268
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 314 CQL--CRKKVGLTGFACRCGGMFCSAHRYSDSHSC 412
CQ+ CR++ L C G+FC HR +SH C
Sbjct: 10 CQVEHCRQRDFLPFVCDDCSGIFCLEHRSRESHGC 44
>sp|Q8I8U6|FEM3_CAEBR Sex-determination protein fem-3 (Cb-FEM-3)
Length = 409
Score = 30.8 bits (68), Expect = 3.7
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -2
Query: 697 REPTNIISTCHQLKISAITDKNVQIKHI*LHKMISRSAGLRFHVR*ISLKIF-----IKK 533
R +++ C+ + AIT QI I +H++ISR+ LRFH + L+ F I +
Sbjct: 127 RTMKTLVAYCNFMYHRAITHNRRQINRIDVHELISRNP-LRFH---MFLQKFLPHPDINR 182
Query: 532 NQSMGEFLIYF 500
EFL YF
Sbjct: 183 THFNNEFLYYF 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,431,536
Number of Sequences: 369166
Number of extensions: 1184836
Number of successful extensions: 3082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)