Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H18
(311 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone 40 0.001
sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone 40 0.001
sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone 40 0.001
sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone (... 40 0.001
sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal ... 30 1.3
sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal ... 30 1.7
sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal ... 30 1.7
sp|Q12287|COX17_YEAST Cytochrome c oxidase copper chaperone 30 2.3
sp|P75377|Y407_MYCPN Hypothetical protein MPN407 (F11_orf879) 28 5.0
>sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone
Length = 63
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 82 CPQTQYRRDLCIKEHGKENCMDLVQEYKACVKA 180
CP+T+ RD CI E G+E+C L++ +K C++A
Sbjct: 26 CPETKKARDACIIEKGEEHCGHLIEAHKECMRA 58
>sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone
Length = 63
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 82 CPQTQYRRDLCIKEHGKENCMDLVQEYKACVKA 180
CP+T+ RD CI E G+E+C L++ +K C++A
Sbjct: 26 CPETKKARDACIIEKGEEHCGHLIEAHKECMRA 58
>sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone
Length = 63
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 82 CPQTQYRRDLCIKEHGKENCMDLVQEYKACVKA 180
CP+T+ RD CI E G+E+C L++ +K C++A
Sbjct: 26 CPETKKARDACIIEKGEEHCGHLIEAHKECMRA 58
>sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone (Dopuin)
Length = 62
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +1
Query: 82 CPQTQYRRDLCIKEHGKENCMDLVQEYKACVKA 180
CP+T+ RD CI E G+E+C L++ +K C++A
Sbjct: 25 CPETKKARDACIIEKGEEHCGHLIEAHKECMRA 57
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y (Ubiquitin
thiolesterase FAF-Y) (Ubiquitin specific-processing
protease FAF-Y) (Deubiquitinating enzyme FAF-Y) (Fat
facets protein related, Y-linked) (Ubiquitin-specific
protease 9, Y chromosome)
Length = 2555
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 168 LCQGCTHRIRFNIMLT*LNVDFRYWISVLCNYKYSL---VVDTDNKYKCFK 311
+CQGC HR T LNVD R ++L + + + +++ N Y C K
Sbjct: 1725 ICQGCPHRFECEESFTTLNVDIRNHQNLLDSLEQYIKGDLLEGANAYHCEK 1775
>sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X (Ubiquitin
thiolesterase FAF-X) (Ubiquitin specific-processing
protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat
facets protein related, X-linked) (Ubiquitin-specific
protease 9, X chromosome)
Length = 2547
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 168 LCQGCTHRIRFNIMLT*LNVDFRYWISVLCN---YKYSLVVDTDNKYKCFK 311
+CQGC HR T LNVD R ++L + Y +++ N Y C K
Sbjct: 1716 ICQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEK 1766
>sp|P70398|USP9X_MOUSE Probable ubiquitin carboxyl-terminal hydrolase FAF-X (Ubiquitin
thiolesterase FAF-X) (Ubiquitin specific-processing
protease FAF-X) (Deubiquitinating enzyme FAF-X) (Fat
facets protein related, X-linked) (Ubiquitin-specific
protease 9, X chromosome) (Ubiquitin carboxyl-terminal
hydrolase FAM) (Fat facets homolog)
Length = 2559
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 168 LCQGCTHRIRFNIMLT*LNVDFRYWISVLCN---YKYSLVVDTDNKYKCFK 311
+CQGC HR T LNVD R ++L + Y +++ N Y C K
Sbjct: 1723 ICQGCPHRYECEESFTTLNVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEK 1773
>sp|Q12287|COX17_YEAST Cytochrome c oxidase copper chaperone
Length = 69
Score = 29.6 bits (65), Expect = 2.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 82 CPQTQYRRDLCIKEHGK--ENCMDLVQEYKACVK 177
C + RD CI +G+ E C + +++YK C+K
Sbjct: 26 CKPEKEERDTCILFNGQDSEKCKEFIEKYKECMK 59
>sp|P75377|Y407_MYCPN Hypothetical protein MPN407 (F11_orf879)
Length = 879
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 148 NPYNFLYHAP*YINHDDIGFEDNHYNVETQLYQN 47
N Y+F ++ + +D I F+D +YN+ET + N
Sbjct: 374 NYYSFGHYHDTNVINDRIDFDDPNYNLETDFFNN 407
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,561,172
Number of Sequences: 369166
Number of extensions: 566640
Number of successful extensions: 1194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)