Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H17
(921 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8N122|RPTOR_HUMAN Regulatory associated protein of mTOR... 87 9e-17
sp|Q8K4Q0|RPTOR_MOUSE Regulatory associated protein of mTOR... 87 9e-17
sp|P38873|YHY6_YEAST Hypothetical 175.8 kDa Trp-Asp repeats... 58 3e-08
sp|P72367|CAP8A_STAAU Capsular polysaccharide type 8 biosyn... 35 0.30
sp|P95695|CAP5A_STAAU Capsular polysaccharide type 5 biosyn... 35 0.39
sp|P31922|SUS1_HORVU Sucrose synthase 1 (Sucrose-UDP glucos... 34 0.51
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 34 0.51
sp|P30319|DPOL_CBEPV DNA polymerase 32 2.5
sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 32 2.5
sp|Q899T7|PSD_CLOTE Phosphatidylserine decarboxylase proenz... 32 2.5
>sp|Q8N122|RPTOR_HUMAN Regulatory associated protein of mTOR (Raptor) (P150 target of
rapamycin (TOR)-scaffold protein)
Length = 1335
Score = 86.7 bits (213), Expect = 9e-17
Identities = 49/172 (28%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Frame = +2
Query: 401 HVIDSARYQDRNQRLKKQRNIKIEGAQNWKASLNSGGTQLS-QIFLQKIDSRPELLKFHP 577
H ++S ++R R + ++ + Q + G T+L QIFL + P ++KFHP
Sbjct: 978 HDLESQIRKEREWRFLRNSRVRRQAQQ----VIQKGITRLDDQIFLNRNPGVPSVVKFHP 1033
Query: 578 YLNYLAVADKSGVSLWNWEYGQRAQYMLSQSVSCKEDVEIDSPYAETSGYITSLEFLNAE 757
+ +AVADK + W+WE G++ Y + + +T++E+LN +
Sbjct: 1034 FTPCIAVADKDSICFWDWEKGEKLDYFHNGNPRYTR--------------VTAMEYLNGQ 1079
Query: 758 EDRGGLILVGTMDGRIKIWRNYLRDMGQDPDIVTAWIALPDQICSNRPSGLI 913
+ L+L T DG I++W+N+ D+ ++P++VTAW L D + + R +G++
Sbjct: 1080 D--CSLLLTATDDGAIRVWKNF-ADLEKNPEMVTAWQGLSDMLPTTRGAGMV 1128
>sp|Q8K4Q0|RPTOR_MOUSE Regulatory associated protein of mTOR (Raptor) (P150 target of
rapamycin (TOR)-scaffold protein)
Length = 1335
Score = 86.7 bits (213), Expect = 9e-17
Identities = 49/172 (28%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Frame = +2
Query: 401 HVIDSARYQDRNQRLKKQRNIKIEGAQNWKASLNSGGTQLS-QIFLQKIDSRPELLKFHP 577
H ++S ++R R + ++ + Q + G T+L QIFL + P ++KFHP
Sbjct: 978 HDLESQIRKEREWRFLRNTRVRKQAQQ----VIQKGITRLDDQIFLNRNPGVPSVVKFHP 1033
Query: 578 YLNYLAVADKSGVSLWNWEYGQRAQYMLSQSVSCKEDVEIDSPYAETSGYITSLEFLNAE 757
+ +AVADK + W+WE G++ Y + + +T++E+LN +
Sbjct: 1034 FTPCIAVADKDSICFWDWEKGEKLDYFHNGNPRYTR--------------VTAMEYLNGQ 1079
Query: 758 EDRGGLILVGTMDGRIKIWRNYLRDMGQDPDIVTAWIALPDQICSNRPSGLI 913
+ L+L T DG I++W+N+ D+ ++P++VTAW L D + + R +G++
Sbjct: 1080 D--CSLLLTATDDGAIRVWKNF-ADLEKNPEMVTAWQGLSDMLPTTRGAGMV 1128
>sp|P38873|YHY6_YEAST Hypothetical 175.8 kDa Trp-Asp repeats containing protein in
GND1-IKI1 intergenic region
Length = 1541
Score = 58.2 bits (139), Expect = 3e-08
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 5/166 (3%)
Frame = +2
Query: 434 NQRL-KKQRNIKIEGAQNWKASLNSGGTQLSQIFLQKIDSRPELLKFHPYLNYLAVAD-K 607
N RL ++ RN I + L+ G ++ S+P+L+KF + + L AD +
Sbjct: 1155 NARLWRRNRNETIIQETQGEKKLSIYGNWSKKLISLNNKSQPKLMKFAQFEDQLITADDR 1214
Query: 608 SGVSLWNWEYGQRAQYMLSQSVSCKEDVEIDSPYAETSGYITSLEFLNAEEDRGGLILVG 787
S +++++WE G+ + +P+ +T L+ +N ED L+L G
Sbjct: 1215 STITVFDWEKGKTLSKFSN-----------GTPFGTK---VTDLKLIN--EDDSALLLTG 1258
Query: 788 TMDGRIKIWRNYLRDMGQDPD---IVTAWIALPDQICSNRPSGLIT 916
+ DG IKI+R+Y QD D IV+AW L D + + R +GL+T
Sbjct: 1259 SSDGVIKIYRDY-----QDVDTFKIVSAWRGLTDMLLTPRSTGLLT 1299
>sp|P72367|CAP8A_STAAU Capsular polysaccharide type 8 biosynthesis protein cap8A
Length = 222
Score = 35.0 bits (79), Expect = 0.30
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 188 SSKYFTQPLLSFHKLTNQSNTSLVLNNENFKSLNSFQSINQSKSFDKISYKRLPNLNISD 367
++KY L S +TNQ NT L+ N KS + S + SF K++ K++P + D
Sbjct: 95 NNKYSPSKLSSMLTITNQENTQLI--NIQVKSGHKQDSEKIANSFAKVTSKQIPKIMSLD 152
Query: 368 SIS 376
++S
Sbjct: 153 NVS 155
>sp|P95695|CAP5A_STAAU Capsular polysaccharide type 5 biosynthesis protein cap5A
Length = 222
Score = 34.7 bits (78), Expect = 0.39
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +2
Query: 188 SSKYFTQPLLSFHKLTNQSNTSLVLNNENFKSLNSFQSINQSKSFDKISYKRLPNLNISD 367
+ KY L S +TNQ NT L+ N KS + S + SF K++ K++P + D
Sbjct: 95 NDKYSPSKLSSMLTITNQENTQLI--NIQVKSGHKQDSEKIANSFAKVTSKQIPKIMSVD 152
Query: 368 SIS 376
++S
Sbjct: 153 NVS 155
>sp|P31922|SUS1_HORVU Sucrose synthase 1 (Sucrose-UDP glucosyltransferase 1)
Length = 807
Score = 34.3 bits (77), Expect = 0.51
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 74 KIDFNLINTELSLEKYLNSFEEGYQFDFKDITTDFFNWSSKYFTQPLLSFHKLTNQSNTS 253
++DF N S+ +G QF + +++ F K PLL+F K N T+
Sbjct: 131 ELDFEPFNASFPRPSMSKSYGKGVQFLNRHLSSKLFQ--DKESLYPLLNFLKAHNYKGTT 188
Query: 254 LVLNNENFKSLNSFQS 301
++L N+ +SL QS
Sbjct: 189 MIL-NDRIQSLRGLQS 203
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 34.3 bits (77), Expect = 0.51
Identities = 35/148 (23%), Positives = 66/148 (44%)
Frame = +2
Query: 62 SHNRKIDFNLINTELSLEKYLNSFEEGYQFDFKDITTDFFNWSSKYFTQPLLSFHKLTNQ 241
S+N K N N + + +N+ E T++ N ++ FTQ +
Sbjct: 134 SYNMKGTINNDNNNMDYLRNINNINEYKGSAKNKFYTNYMNKNNLKFTQNNNDNMNINED 193
Query: 242 SNTSLVLNNENFKSLNSFQSINQSKSFDKISYKRLPNLNISDSISKNSSRRLMHVIDSAR 421
+N + NN N +++Q+ N +++ + I+ KR NLN +++I+ N ++
Sbjct: 194 NNNNNNNNNNNNGVFSNYQNNNMNRN-NSINIKR--NLNNNNNINNN--------MNKMG 242
Query: 422 YQDRNQRLKKQRNIKIEGAQNWKASLNS 505
QD+NQ + QN K S+N+
Sbjct: 243 SQDKNQNSNNNFYMNY-NYQNRKNSMNN 269
>sp|P30319|DPOL_CBEPV DNA polymerase
Length = 964
Score = 32.0 bits (71), Expect = 2.5
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Frame = +2
Query: 80 DFNLINTELSLEKYLNSFEEGYQFDFKDITTDFFNWSSKYFTQPLLS-FHKLTNQSNTSL 256
DFN+I E+ L+ Y N E+ K TD + + Y + + S +++ NQ
Sbjct: 53 DFNIITNEVELQSYYNFTEDS---KIKLNNTDLILFMTPYKIERIYSKYNRNFNQYRWFY 109
Query: 257 VLNNENFKSLNSFQSINQSKSFDKISYKRLPNLNISD 367
+LNN I + S+ KI+ L N+NI D
Sbjct: 110 ILNN-----------IEPAGSY-KINMSNLQNINIYD 134
>sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11
Length = 614
Score = 32.0 bits (71), Expect = 2.5
Identities = 55/271 (20%), Positives = 105/271 (38%), Gaps = 8/271 (2%)
Frame = +2
Query: 26 QFIQPIHSALYPSHN-RKIDFNLINTELSLEKYLNSFEEGYQFDFKDITTDFFNWSSKYF 202
Q I PIH + YP +N ++ I + N F +G I+T ++ +
Sbjct: 136 QQIPPIHQSAYPQNNVAEVLMPPIPPSVEASSGQN-FNQGIASQNPAISTSNLPSTTPLY 194
Query: 203 TQPL-LSFHKLTNQSNTSLV-LNNENFKSLNSFQSINQSKSFDKISYKRLPNLNISDSIS 376
P+ ++++ Q N L ++N S S ++N +I K P+ S + S
Sbjct: 195 IPPVNYGANQVSQQPNPQLPGVSNYYNPSATSKPAVNVQP--PRIPTKATPSAEPSMTAS 252
Query: 377 KNSSRRLMHVIDSARYQDRNQ--RLKKQRNIKIEGAQNWKASLNSGGTQLSQIFLQKIDS 550
N+ + YQ R Q + + +Q+W + N ++ I L
Sbjct: 253 ANAG-SISQAGPDGEYQGREQIAPVSDTEAARKTTSQSWYVTYNPACKRVFNINLVHTLE 311
Query: 551 RPEL---LKFHPYLNYLAVADKSGVSLWNWEYGQRAQYMLSQSVSCKEDVEIDSPYAETS 721
P + +KF YLA ++++ + G++ + +S D+
Sbjct: 312 HPSVVCCVKFSNNGKYLATGCNQAANVFDVQTGKKLFTLHEESPDPSRDL---------- 361
Query: 722 GYITSLEFLNAEEDRGGLILVGTMDGRIKIW 814
Y+ ++ F G ++ GT D +IK+W
Sbjct: 362 -YVRTIAF----SPDGKYLVTGTEDRQIKLW 387
>sp|Q899T7|PSD_CLOTE Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 297
Score = 32.0 bits (71), Expect = 2.5
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 65 HNRKIDFNLINTELSLEKYLNSFEEGYQFDFKDITTD--FFNWSSKYFTQPLLSFHKLTN 238
+NRK I ++S EK LN +F DI T FF++ + LS K+ +
Sbjct: 5 YNRKTKSYEIE-KISGEKLLNWLYNSKNINFLDIVTKKKFFSYIYGQYCDSKLSTLKIKS 63
Query: 239 QSNTSLVLNNENFKSLNSFQSIN 307
N + NE+ KS+ F S N
Sbjct: 64 FVNNFNIDMNESLKSIGEFNSFN 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,574,216
Number of Sequences: 369166
Number of extensions: 2059735
Number of successful extensions: 5770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5764
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)