Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H16-2
(371 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall prot... 32 0.35
sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall prote... 32 0.45
sp|Q9KM17|DDL_VIBCH D-alanine--D-alanine ligase (D-alanylal... 31 1.0
sp|P19172|CHIA_ARATH Acidic endochitinase precursor 30 1.3
sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance ... 30 1.7
sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall prot... 30 1.7
sp|Q9M081|SC24B_ARATH Putative protein transport protein Se... 30 2.3
sp|Q9H4Q3|PRD13_HUMAN PR-domain zinc finger protein 13 29 2.9
sp|O95497|VNN1_HUMAN Pantetheinase precursor (Pantetheine h... 29 3.9
sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 (RanBP9) (RanBP... 28 5.0
>sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall protein 1 precursor
Length = 206
Score = 32.3 bits (72), Expect = 0.35
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = -1
Query: 263 PQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPIVTSFPVLALPINNP 84
PQG+ Y P P +K PP K PV P P V PV P+ P
Sbjct: 18 PQGLANYEKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKP 77
>sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall protein precursor (MSPRP)
Length = 236
Score = 32.0 bits (71), Expect = 0.45
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = -1
Query: 263 PQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPIVTSFPVLALPINNP 84
PQG+ Y P P +K PP K PV P P V PV P+ P
Sbjct: 18 PQGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVVKP 77
>sp|Q9KM17|DDL_VIBCH D-alanine--D-alanine ligase (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase)
Length = 334
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Frame = +1
Query: 1 VGCGRQASLSWFPGVSGQVPYNA--IPAAPGLFIGRAKTGNDVTIGKVASGHNTGFFPYG 174
+GCG +AS + F ++ ++ Y+A IP P LF+ + T + + K A GH F
Sbjct: 104 LGCGPEASANSFNKITSKLWYDALDIPNTPYLFLTQ-NTPSSIDKAKQAFGHWGSIFVKA 162
Query: 175 GRE-DNISNYEV 207
R+ ++ Y+V
Sbjct: 163 ARQGSSVGCYKV 174
>sp|P19172|CHIA_ARATH Acidic endochitinase precursor
Length = 302
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +1
Query: 124 TIGKVASGHNTGFFPYGGREDNISNYEVLCDTGLHVFGPEYAWIPCGNGQAPLNAVVGGC 303
++ K + G Y G+ N N C TG + + + GNGQ P + G C
Sbjct: 20 SLSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHC 79
>sp|Q9R1D7|GBF1_CRIGR Golgi-specific brefeldin A-resistance guanine nucleotide exchange
factor 1 (BFA-resistant GEF 1)
Length = 1856
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -1
Query: 308 LMQPPTTAFNGACPF--PQGIHAYSGPKTCNPV-SHKTXXXXXXXXLPPYGKNPVLCPEA 138
L P + GAC P+G A S +PV S + PP + P++
Sbjct: 1751 LPSPEIPSEVGACDSEKPEGTRATSSSSPGSPVASSPSRLSPSPEGPPPLAQPPLILQPL 1810
Query: 137 TLPIVTSFPVLALPI 93
T P+ P +ALPI
Sbjct: 1811 TSPLQVGVPPMALPI 1825
>sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2 precursor
Length = 371
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = -1
Query: 263 PQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPIVTSFPVLALPINNP 84
P+G+ Y P P +K PP K PV P P V PV P+ P
Sbjct: 18 PRGLANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKP 77
>sp|Q9M081|SC24B_ARATH Putative protein transport protein Sec24-like At4g32640
Length = 1069
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = -1
Query: 305 MQPPTTAFNGACPFPQGIHAYSGPKTCNPVSHKTXXXXXXXXLPPYGKNPVLCPEATLPI 126
++PP+ + P P G H+ SG P + + P+G+ V + LP
Sbjct: 224 VRPPSAPYARTPPQPLGSHSLSGNPPLTPFTAPSMPPPATFPGAPHGRPAV----SGLPY 279
Query: 125 VTSFPVLALPINNPGAAGIALYGT*PL 45
+A P+ PG YG PL
Sbjct: 280 GPPSAQVAPPLGFPGQMQPPRYGMGPL 306
>sp|Q9H4Q3|PRD13_HUMAN PR-domain zinc finger protein 13
Length = 717
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Frame = -1
Query: 368 LPTLM*PFTIALPT*SGSLLLMQPPTTA-------FNGACPFPQGIHAYSGP 234
LP +M FT+ +G LL P TTA F G +P+ I +SGP
Sbjct: 465 LPAVMPAFTVY----NGELLYGSPATTAYYPLKLHFGGLLKYPESISYFSGP 512
>sp|O95497|VNN1_HUMAN Pantetheinase precursor (Pantetheine hydrolase) (Vascular
non-inflammatory molecule 1) (Vanin-1) (Tiff66)
Length = 513
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Frame = +1
Query: 169 YGGREDNISNYEVLCDTGLHVFGPEYAWIPCGN----GQAPLNAVVGGCINNNEPLYV 330
YG + S Y L D + PE WIPC N GQ P+ + C+ N +YV
Sbjct: 83 YGWNFNRDSLYPYLED----IPDPEVNWIPCNNRNRFGQTPVQERL-SCLAKNNSIYV 135
>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding protein M)
(RanBPM) (BPM90) (BPM-L)
Length = 729
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +1
Query: 37 PGVSGQVPYNAIPAAPGLFIGRAKTGNDVTIGKVASGHNTGFFPYG 174
P S P + PA PGL G G T VA FP+G
Sbjct: 91 PPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSSAAAPFPHG 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,833,173
Number of Sequences: 369166
Number of extensions: 922474
Number of successful extensions: 2381
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2379
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)