Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H15
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 39 0.025
sp|Q8KA50|PT1_BUCAP Phosphoenolpyruvate-protein phosphotran... 39 0.025
sp|Q9WXI6|PT1_BUCAI Phosphoenolpyruvate-protein phosphotran... 39 0.025
sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kin... 38 0.033
sp|Q03101|CYAG_DICDI Adenylate cyclase, germination specifi... 38 0.043
sp|Q9VS50|ECO_DROME N-acetyltransferase eco (Establishment ... 36 0.16
sp|Q9TU23|CE290_BOVIN Centrosomal protein Cep290 36 0.16
sp|P22545|PVDA_PLAKN DUFFY RECEPTOR, ALPHA FORM preCURSOR (... 36 0.16
sp|P78022|RPOD_MYCPN RNA polymerase sigma factor rpoD (Sigm... 35 0.21
sp|Q03661|YM67_YEAST Hypothetical 187.1 kDa protein in GUA1... 35 0.21
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 38.5 bits (88), Expect = 0.025
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +1
Query: 250 NKKNLESIKQDSTDFHSSNDLQDISLNILENTTKVIENEKEVDEY---IGINNQISGNSK 420
N+ N E D+ +N++ + + +NT V N D + +G NN N+
Sbjct: 347 NQMNFEQTNNDNMK-RENNNMNNYGYD--DNTVHVNNNTPSTDFFSRAVGYNNNYLNNNN 403
Query: 421 EISKSESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIENN 597
++ + + SN + +K++ S +++ N S+ NN+ +N IN+N+ I NN
Sbjct: 404 NMNSAVNNN------SSNGNNMKNENS-ENKNVADNNDSLNNNKNNNNNINMNESINNN 455
>sp|Q8KA50|PT1_BUCAP Phosphoenolpyruvate-protein phosphotransferase (Phosphotransferase
system, enzyme I)
Length = 570
Score = 38.5 bits (88), Expect = 0.025
Identities = 33/123 (26%), Positives = 60/123 (48%)
Frame = +1
Query: 256 KNLESIKQDSTDFHSSNDLQDISLNILENTTKVIENEKEVDEYIGINNQISGNSKEISKS 435
K LE IK + + + D++DI +L+N + + + I NQ+ SK+++ S
Sbjct: 113 KALEKIKDEYLK-NRAIDVRDIGSRLLKNILNI-----SIVDLNNIKNQVILISKDLTPS 166
Query: 436 ESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIENNEFRISE 615
E+ ++ Y+ + L PTSH S S+ +N+ K ++NN+F I +
Sbjct: 167 ETAQINLKYILGFITDL----GGPTSHTSIMARSLEIPAIVGT-VNITKKVKNNDFIILD 221
Query: 616 SVN 624
S+N
Sbjct: 222 SLN 224
>sp|Q9WXI6|PT1_BUCAI Phosphoenolpyruvate-protein phosphotransferase (Phosphotransferase
system, enzyme I)
Length = 571
Score = 38.5 bits (88), Expect = 0.025
Identities = 36/142 (25%), Positives = 67/142 (47%)
Frame = +1
Query: 256 KNLESIKQDSTDFHSSNDLQDISLNILENTTKVIENEKEVDEYIGINNQISGNSKEISKS 435
K LE +K + + + D++DI +L+N + + + INN++ +K+++ S
Sbjct: 113 KALEKLKDEYLK-NRAIDVRDIGNRLLKNILNL-----NIIDLNNINNEVILIAKDLTPS 166
Query: 436 ESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIENNEFRISE 615
E+ ++ Y+ + L + TSH S S+ G N+ K ++NN+F I +
Sbjct: 167 ETAQINLKYILGFITDLGSR----TSHTSIMARSLEIPAIVGTG-NITKIVKNNDFIILD 221
Query: 616 SVNKFPLKNSDAHSILSTDFKK 681
S+N L N I T+ K
Sbjct: 222 SINNQILINPSHKLINQTEVIK 243
>sp|P54677|PI4K_DICDI Phosphatidylinositol 4-kinase (PI4-kinase) (PtdIns-4-kinase)
(PI4K-alpha)
Length = 1093
Score = 38.1 bits (87), Expect = 0.033
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Frame = +1
Query: 241 EVENKKNLESIKQDSTDFHSSNDLQDISLNILENTTKVIENEKEVDEYIGINNQI--SGN 414
E + KK++ S ++ + +++N D + N +++ NE + NNQ S N
Sbjct: 176 ENDPKKDINSNNNNNNNINNNNSNNDDN-----NNNEILPNENSDNSINDENNQYGNSNN 230
Query: 415 SKEISKSESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIEN 594
+ IS E+ +K D NKS + T T + ++ ++N N N N
Sbjct: 231 NNNIS-GENNNIKIDINSQNKSDSNIETLNSTLCEETKTSPIKDDMENNNNNNNNNNNNN 289
Query: 595 NEFRISESVNKFPLKNSDAHSILSTDFKKDSGSFVAKPVYGIGNKIKTSESD 750
N + ++N + N++ ++ + ++ +GS + GIG + +D
Sbjct: 290 NNNNNNNNINNNNINNNNINNNNNINYGHINGSL--STLDGIGQPYISQPND 339
>sp|Q03101|CYAG_DICDI Adenylate cyclase, germination specific (ATP pyrophosphate-lyase)
(Adenylyl cyclase)
Length = 858
Score = 37.7 bits (86), Expect = 0.043
Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Frame = +1
Query: 250 NKKNLESIKQDSTDFHSSNDLQDISLNILENTTKVIENEK---EVDEYIGINNQISGNSK 420
N N+ ++T+F+++N+ DI++N +N N +++ G NN I+ N+
Sbjct: 741 NNNNINDNNINNTNFNNNNN--DININNSDNVNNYENNNNFSDKIENNDGDNNNINDNNY 798
Query: 421 EISKSESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIENNE 600
+ + +++ K + DS + I + NN+ +N N N NN+
Sbjct: 799 KSTNENNIKSKTLFKDSKSL---------INDIKMAKENCDNNDDNNNNNNNNNNNNNND 849
Query: 601 FRISESVNK 627
+ NK
Sbjct: 850 ENVESKKNK 858
Score = 33.9 bits (76), Expect = 0.62
Identities = 38/187 (20%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Frame = +1
Query: 280 DSTDFHSSNDLQDISLNILENTTKVIENEKEVDEYIGINN------QISGNSKEISKSES 441
D +++H D ++ + + + E+E E +E + N QI +++S ++S
Sbjct: 671 DGSEYHDDPFPSDSNVGYHDTSKDIKEDENEQNETLLFNQEQLKKKQIENIQRDLSLNDS 730
Query: 442 VRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIENNEFR----- 606
+ ++N + + + +TN ++ N+ N NVN NN F
Sbjct: 731 IEAIKILNNNNNNNINDN-----NINNTNFNNNNNDININNSDNVNNYENNNNFSDKIEN 785
Query: 607 ---ISESVNKFPLKNSDAHSILSTDFKKDSGSFVAKPVYGIGNKIKTSESDESLKNKQLD 777
+ ++N K+++ ++I S KDS S + N IK ++ E+ N +
Sbjct: 786 NDGDNNNINDNNYKSTNENNIKSKTLFKDSKSLI--------NDIKMAK--ENCDNNDDN 835
Query: 778 NGRGSSN 798
N ++N
Sbjct: 836 NNNNNNN 842
>sp|Q9VS50|ECO_DROME N-acetyltransferase eco (Establishment of cohesion 1 homolog) (ECO1
homolog)
Length = 1052
Score = 35.8 bits (81), Expect = 0.16
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 1/158 (0%)
Frame = +1
Query: 391 INNQISGNSKEISKSESVRLKHDYVDSN-KSPLKHQVSCPTSHISTNVHSVPNNEKSNRG 567
+N+ S NS+ S R++ DS+ SP P+S ++ P + +
Sbjct: 113 LNSNSSSNSRN-SSPRQTRVQRKRADSSMSSPTSSSEGTPSSRARNSIRRSPRTFSAQKD 171
Query: 568 INVNKCIENNEFRISESVNKFPLKNSDAHSILSTDFKKDSGSFVAKPVYGIGNKIKTSES 747
+ E+ + R+S+ V +K D+ S+L KK + S KTS +
Sbjct: 172 PDAFSSPESFQTRLSK-VAAMLMKGQDSRSMLEKSKKKHNHSLKTTAQVHTTKPKKTSPA 230
Query: 748 DESLKNKQLDNGRGSSNQMEIVTEHTEDIPISKSILNR 861
+ES + + + +S + V E IS NR
Sbjct: 231 EESQSDDEKPSSSKNSRKNTEVRETRSSQIISPKTRNR 268
>sp|Q9TU23|CE290_BOVIN Centrosomal protein Cep290
Length = 1453
Score = 35.8 bits (81), Expect = 0.16
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 8/174 (4%)
Frame = +1
Query: 277 QDSTDFHSS---NDLQDISLNILE-----NTTKVIENEKEVDEYIGINNQISGNSKEISK 432
Q D H+ + ++D++ NIL+ T+K EN D + N++ K K
Sbjct: 856 QQIVDRHTKELKSQIEDLNENILKLKEALKTSKNRENTL-TDNLNDLTNELQNKQKAYGK 914
Query: 433 SESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRGINVNKCIENNEFRIS 612
V + D VD + LK Q+ TS + + K + + K I+ E ++
Sbjct: 915 ---VLREKDAVDQENNELKRQIKRLTSGLQGKPLI---DNKQSLIEELQKKIKKLESQLE 968
Query: 613 ESVNKFPLKNSDAHSILSTDFKKDSGSFVAKPVYGIGNKIKTSESDESLKNKQL 774
V++ +K S + + G + GI NK+K E + + KQL
Sbjct: 969 RKVDEAEMKPMKEKSAREEVIRWEEGKKWQTKIEGIRNKLKEKEGEVYILTKQL 1022
>sp|P22545|PVDA_PLAKN DUFFY RECEPTOR, ALPHA FORM preCURSOR (ERYTHROCYTE BINDING PROTEIN)
Length = 1073
Score = 35.8 bits (81), Expect = 0.16
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Frame = +1
Query: 223 DLGGVKEVENKKNLESIKQDSTDFHSSNDLQDISLNILENTTKVIEN-----EKEVDEYI 387
D G V NK+N + + SN+ ++NTT +EN EK+ ++
Sbjct: 752 DNGNVPGSGNKQNEGATALSGAESLKSNESVH---KTIDNTTHGLENKNGGNEKDFQKHD 808
Query: 388 GINNQISGNSKEISKSESVRLKHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSNRG 567
+NN + + + S + D+ S+++ H S TS T+ +++ +
Sbjct: 809 FMNNDMLNDQASSDHTSSDQTSSDHTSSDQTSSDHTSSDHTSSDQTSSDQTSSDQTIDTE 868
Query: 568 INVNKCIENNEFRISESVNKFP-LKNSDAHSILS 666
+ + N E + SE ++K ++NS+++ + S
Sbjct: 869 GHHRDNVRNPEIKSSEDMSKGDFMRNSNSNELYS 902
>sp|P78022|RPOD_MYCPN RNA polymerase sigma factor rpoD (Sigma-A)
Length = 499
Score = 35.4 bits (80), Expect = 0.21
Identities = 39/202 (19%), Positives = 88/202 (43%), Gaps = 10/202 (4%)
Frame = +1
Query: 271 IKQDSTDFHSSNDLQDISLNILENTTKVIENEKEVDEYIGINNQISGNSKEISKSESVRL 450
+++ +F ++ DL I +I E TTK I N +VD+ + +SK + R+
Sbjct: 174 VEEHIHEFRANQDLSIIDEDIEELTTKNISNRDKVDDNVRFFLGSLDSSKMLDFESEQRI 233
Query: 451 KHDYVDSNKSPLKHQVSCPTSHISTNVHSVPNNEKSN--RGINVNKCIENNEFRISESVN 624
+++ K+ ++ +++N+ V + K + RG++ N I+ + ++++
Sbjct: 234 AKVLNSTDEESRKYAIN---QLVTSNLRLVVSIAKKHLERGLDFNDLIQEGNLGLLKAIS 290
Query: 625 KFPLKNSDAHSILSTDFKK--------DSGSFVAKPVYGIGNKIKTSESDESLKNKQLDN 780
KF + S +T + K D V PV+ + + ++++ +L N++L
Sbjct: 291 KFNWSLGNKFSTYATWWIKQAITRAIADQARTVRIPVHMVETINRLAKAERAL-NQELGR 349
Query: 781 GRGSSNQMEIVTEHTEDIPISK 846
+ E + E + K
Sbjct: 350 EPTAEELAEKMGGQAEGFTVKK 371
>sp|Q03661|YM67_YEAST Hypothetical 187.1 kDa protein in GUA1-ERG8 intergenic region
Length = 1658
Score = 35.4 bits (80), Expect = 0.21
Identities = 64/300 (21%), Positives = 124/300 (41%), Gaps = 29/300 (9%)
Frame = +1
Query: 28 NIESSEFQSDTDDNSEITSLNENSVKMRPKRLSLVMAPSKSDXXXXXXXXXXXXXXXXXX 207
+IESS+ +S + SE S ++ KM+ ++ + + S+
Sbjct: 402 DIESSDSESQSAQESEQGSEDDFEYKMKNEKSTSEETENTSESRD--------------- 446
Query: 208 XTQGI--DLGGVKEVENKKNLESIKQDST-------DFHSSNDLQDISLNILENTT--KV 354
QG D +VE ++N E ++D +FH +N+ + S N+LEN T +
Sbjct: 447 --QGFAKDAYTKNKVEQQENDEEPEKDDIIRSSLDKNFHGNNNKSEYSENVLENETDPAI 504
Query: 355 IENEKEVDEYIGINNQISGNSKEISKSESVRLKHDYVDSNKSPLKHQVS----CPTSHIS 522
+E E ++++ G + ++G S E E + Y + ++ L+ Q S CP
Sbjct: 505 VERENQINDVEGYD--VTGKSVESDLHEH-SPDNLYDLAARAMLQFQQSRNSNCPQKEEQ 561
Query: 523 TNVHSVPNNEKSNRGINVNKCIENNEFRISESVNKFPLKN--SDAHSILSTDFKKDSGSF 696
+ + ++ SN + + ES + PLK+ + ++ L TD + D S
Sbjct: 562 VSESYLGHSNGSNL----------SGRSLDESEEQIPLKDFTGENNNNLKTD-RGDLSSS 610
Query: 697 VAKPVYGIGNK---------IKTSESDESLKNKQLDNGRG---SSNQMEIVTEHTEDIPI 840
V V + K + +D ++ N L N S + + ++E+ D+P+
Sbjct: 611 VEIEVEKVSEKKLDGSTEKELVPLSTDTTINNSSLGNEDSIYYSLDDADAISENLTDVPL 670
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.303 0.122 0.322
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,124,307
Number of Sequences: 369166
Number of extensions: 1428098
Number of successful extensions: 2725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2698
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)