Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H14
(350 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 160 6e-40
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 159 2e-39
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 157 9e-39
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 151 5e-37
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 151 5e-37
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 140 7e-34
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 137 8e-33
sp|Q8XHL8|SYK_CLOPE Lysyl-tRNA synthetase (Lysine--tRNA lig... 132 3e-31
sp|Q899G7|SYK_CLOTE Lysyl-tRNA synthetase (Lysine--tRNA lig... 131 4e-31
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 131 5e-31
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 160 bits (406), Expect = 6e-40
Identities = 74/93 (79%), Positives = 85/93 (91%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFELFVMKKE+CNAYTELNDP+ QR+ FE+QAK KAAGD+EAMF+DE F A+E G+PP
Sbjct: 482 ERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPP 541
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPE 296
TAGWG+GIDRLTMFLTD++NIKEVL FPAMKPE
Sbjct: 542 TAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPE 574
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 159 bits (401), Expect = 2e-39
Identities = 73/93 (78%), Positives = 85/93 (91%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFELFVMKKE+CNAYTELNDP+ QR+ FE+QAK KAAGD+EAMF+DE F A+E G+PP
Sbjct: 484 ERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPP 543
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPE 296
TAGWG+GIDR+TMFLTD++NIKEVL FPAMKPE
Sbjct: 544 TAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPE 576
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 157 bits (396), Expect = 9e-39
Identities = 72/93 (77%), Positives = 84/93 (90%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFELFVMKKE+CNAYTELNDP+ QR+ FE+QAK KAAGD+EAMF+DE F A+E G+PP
Sbjct: 484 ERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYGLPP 543
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPE 296
TAGWG+GIDR+ MFLTD++NIKEVL FPAMKPE
Sbjct: 544 TAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 576
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 151 bits (381), Expect = 5e-37
Identities = 69/93 (74%), Positives = 81/93 (87%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFELFV K E+CNAYTELNDP+VQR+RFE+Q KD+ +GD+EAM +DETF A+E G+PP
Sbjct: 509 ERFELFVNKHEVCNAYTELNDPVVQRQRFEEQLKDRQSGDDEAMALDETFCTALEYGLPP 568
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPE 296
T GWGLGIDRLTM LTD+ NIKEVL FPAMKP+
Sbjct: 569 TGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQ 601
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 151 bits (381), Expect = 5e-37
Identities = 69/98 (70%), Positives = 82/98 (83%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFELF + +E+ NAYTELNDPI QR+RFEQQAKDK AGD+EA +DETF A+E G+PP
Sbjct: 464 ERFELFAVTREIANAYTELNDPITQRQRFEQQAKDKDAGDDEAQMIDETFCNALEYGLPP 523
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPEFGIKK 311
T GWG+GIDRL+M LTD +NIKEVL FPAM+PE G +K
Sbjct: 524 TGGWGMGIDRLSMILTDNNNIKEVLLFPAMRPEDGTEK 561
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 140 bits (354), Expect = 7e-34
Identities = 65/92 (70%), Positives = 77/92 (83%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFELF+ K ELCNAYTELNDP+VQR+RF Q KD+ +GD+EAM +DETF A+E G+ P
Sbjct: 518 ERFELFINKHELCNAYTELNDPVVQRQRFADQLKDRQSGDDEAMALDETFCNALEYGLAP 577
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKP 293
T GWGLGIDRL+M LTD+ NIKEVL FPAM+P
Sbjct: 578 TGGWGLGIDRLSMLLTDSLNIKEVLFFPAMRP 609
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 137 bits (345), Expect = 8e-33
Identities = 62/93 (66%), Positives = 74/93 (79%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFE+FV KE+CNAYTELNDP QR RFE+QA+ K GD+EA VDETF A+E G+PP
Sbjct: 487 ERFEVFVATKEICNAYTELNDPFDQRARFEEQARQKDQGDDEAQLVDETFCNALEYGLPP 546
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPE 296
T GWG GIDRL MFLTD++ I+EVL FP +KP+
Sbjct: 547 TGGWGCGIDRLAMFLTDSNTIREVLLFPTLKPD 579
>sp|Q8XHL8|SYK_CLOPE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 501
Score = 132 bits (331), Expect = 3e-31
Identities = 59/93 (63%), Positives = 77/93 (82%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERFE FV +E+CNAY+ELNDPIVQRERFEQQA+++ GD+EA +DE F+ A+E GMPP
Sbjct: 408 ERFEGFVYGREVCNAYSELNDPIVQRERFEQQAREREYGDDEAYMLDEEFMSALETGMPP 467
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKPE 296
T G G+GIDR+ MFLTD+ +I++V+ FP MKP+
Sbjct: 468 TGGLGIGIDRMIMFLTDSSSIRDVILFPTMKPQ 500
>sp|Q899G7|SYK_CLOTE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 502
Score = 131 bits (330), Expect = 4e-31
Identities = 59/94 (62%), Positives = 76/94 (80%)
Frame = +3
Query: 12 HEERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGM 191
+ ERFE FV +ELCNAYTELNDPIVQ+ERF QQ K++ GD+EA +DE F+ A+E+GM
Sbjct: 406 YTERFEGFVYGRELCNAYTELNDPIVQKERFIQQLKERELGDDEAFMMDEDFINALEIGM 465
Query: 192 PPTAGWGLGIDRLTMFLTDTDNIKEVLCFPAMKP 293
PPT G G+G+DRL MFLTD+ +I++V+ FP MKP
Sbjct: 466 PPTGGLGIGVDRLVMFLTDSHSIRDVILFPTMKP 499
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 131 bits (329), Expect = 5e-31
Identities = 59/91 (64%), Positives = 75/91 (82%)
Frame = +3
Query: 18 ERFELFVMKKELCNAYTELNDPIVQRERFEQQAKDKAAGDEEAMFVDETFLEAMELGMPP 197
ERF LFV ++ELC+AYTELNDP QRERF +Q KD+ GD+EAM +DE+F+ A+E G+PP
Sbjct: 496 ERFNLFVNRRELCDAYTELNDPTAQRERFAEQLKDRQLGDDEAMDLDESFITALEYGLPP 555
Query: 198 TAGWGLGIDRLTMFLTDTDNIKEVLCFPAMK 290
T G G+GIDRLTM LTD+ N+KEV+ FPAM+
Sbjct: 556 TGGLGMGIDRLTMLLTDSQNVKEVILFPAMR 586
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,853,523
Number of Sequences: 369166
Number of extensions: 761966
Number of successful extensions: 2536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2518
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)