Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_H08
(913 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathe... 401 e-111
sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (... 394 e-109
sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RS... 391 e-108
sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [... 389 e-108
sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [... 375 e-104
sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase p... 358 9e-99
sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase p... 346 5e-95
sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6... 317 3e-86
sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5... 313 3e-85
sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precu... 308 1e-83
>sp|P07688|CATB_BOVIN Cathepsin B precursor [Contains: Cathepsin B light chain; Cathepsin
B heavy chain]
Length = 335
Score = 401 bits (1031), Expect = e-111
Identities = 182/282 (64%), Positives = 215/282 (76%), Gaps = 1/282 (0%)
Frame = +2
Query: 14 ISDIRKVLG-VMKDPNNFKLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSC 190
+S ++K+ G ++ P KLP+R V LP +FDAR QWP C +I EIRDQ +CGSC
Sbjct: 52 LSYVKKLCGAILGGP---KLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSC 108
Query: 191 WAFGAVEAITDRYCIHSNGTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLV 370
WAFGAVEAI+DR CIHSNG +SAED+LTCCG CGDGCNGGFPSGAW++W GLV
Sbjct: 109 WAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLV 168
Query: 371 TGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKS 550
+GG Y +H+GC+ Y+ P C HHV G P CTGE TPKC K C+ GYS +Y EDK +G S
Sbjct: 169 SGGLYNSHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCNKTCEPGYSPSYKEDKHFGCS 228
Query: 551 SYSVDSNQQAIMQEILTNGPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVE 730
SYSV +N++ IM EI NGPVE AFSVY+DF YKSGVYQHVSG ++GGHAI+ILGWGVE
Sbjct: 229 SYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMGGHAIRILGWGVE 288
Query: 731 NNTPYWLVANSWNPTWGDNGYFKILRGSDECGIEDEVVAGIP 856
N TPYWLV NSWN WGDNG+FKILRG D CGIE E+VAG+P
Sbjct: 289 NGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGMP 330
>sp|P07858|CATB_HUMAN Cathepsin B precursor (Cathepsin B1) (APP secretase) (APPS)
[Contains: Cathepsin B light chain; Cathepsin B heavy
chain]
Length = 339
Score = 394 bits (1012), Expect = e-109
Identities = 174/265 (65%), Positives = 207/265 (78%)
Frame = +2
Query: 65 KLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSN 244
K P+R ++LP +FDAR QWP+C +I EIRDQ +CGSCWAFGAVEAI+DR CIH+N
Sbjct: 67 KPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 126
Query: 245 GTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPK 424
+ +SAEDLLTCCG CGDGCNGG+P+ AW++W GLV+GG Y +H+GC+ Y+ P
Sbjct: 127 AHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPP 186
Query: 425 CSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTN 604
C HHV G P CTGE TPKC K C+ GYS TY +DK YG +SYSV ++++ IM EI N
Sbjct: 187 CEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKN 246
Query: 605 GPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGD 784
GPVE AFSVY+DF YKSGVYQHV+G M+GGHAI+ILGWGVEN TPYWLVANSWN WGD
Sbjct: 247 GPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGD 306
Query: 785 NGYFKILRGSDECGIEDEVVAGIPK 859
NG+FKILRG D CGIE EVVAGIP+
Sbjct: 307 NGFFKILRGQDHCGIESEVVAGIPR 331
>sp|P00787|CATB_RAT Cathepsin B precursor (Cathepsin B1) (RSG-2) [Contains: Cathepsin B
light chain; Cathepsin B heavy chain]
Length = 339
Score = 391 bits (1004), Expect = e-108
Identities = 173/283 (61%), Positives = 214/283 (75%), Gaps = 1/283 (0%)
Frame = +2
Query: 14 ISDIRKVLG-VMKDPNNFKLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSC 190
IS ++K+ G V+ PN LP+R + LP +FDAR QW C +I +IRDQ +CGSC
Sbjct: 52 ISYLKKLCGTVLGGPN---LPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSC 108
Query: 191 WAFGAVEAITDRYCIHSNGTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLV 370
WAFGAVEA++DR CIH+NG +SAEDLLTCCG +CGDGCNGG+PSGAW++W GLV
Sbjct: 109 WAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLV 168
Query: 371 TGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKS 550
+GG Y +H+GC Y P C HHV G P CTGE TPKC K C+AGYS +Y EDK YG +
Sbjct: 169 SGGVYNSHIGCLPYTIPPCEHHVNGSRPPCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYT 228
Query: 551 SYSVDSNQQAIMQEILTNGPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVE 730
SYSV +++ IM EI NGPVE AF+V++DF +YKSGVY+H +G ++GGHAI+ILGWG+E
Sbjct: 229 SYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMGGHAIRILGWGIE 288
Query: 731 NNTPYWLVANSWNPTWGDNGYFKILRGSDECGIEDEVVAGIPK 859
N PYWLVANSWN WGDNG+FKILRG + CGIE E+VAGIP+
Sbjct: 289 NGVPYWLVANSWNVDWGDNGFFKILRGENHCGIESEIVAGIPR 331
>sp|P10605|CATB_MOUSE Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 339
Score = 389 bits (998), Expect = e-108
Identities = 175/283 (61%), Positives = 213/283 (75%), Gaps = 1/283 (0%)
Frame = +2
Query: 14 ISDIRKVLG-VMKDPNNFKLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSC 190
IS ++K+ G V+ P KLP R + LP TFDAR QW C +IG+IRDQ +CGSC
Sbjct: 52 ISYLKKLCGTVLGGP---KLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSC 108
Query: 191 WAFGAVEAITDRYCIHSNGTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLV 370
WAFGAVEAI+DR CIH+NG +SAEDLLTCCG +CGDGCNGG+PSGAW +W GLV
Sbjct: 109 WAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLV 168
Query: 371 TGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTGEFPTPKCKKACQAGYSKTYAEDKQYGKS 550
+GG Y +H+GC Y P C HHV G P CTGE TP+C K+C+AGYS +Y EDK +G +
Sbjct: 169 SGGVYNSHVGCLPYTIPPCEHHVNGSRPPCTGEGDTPRCNKSCEAGYSPSYKEDKHFGYT 228
Query: 551 SYSVDSNQQAIMQEILTNGPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVE 730
SYSV ++ + IM EI NGPVE AF+V++DF +YKSGVY+H +G M+GGHAI+ILGWGVE
Sbjct: 229 SYSVSNSVKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDMMGGHAIRILGWGVE 288
Query: 731 NNTPYWLVANSWNPTWGDNGYFKILRGSDECGIEDEVVAGIPK 859
N PYWL ANSWN WGDNG+FKILRG + CGIE E+VAGIP+
Sbjct: 289 NGVPYWLAANSWNLDWGDNGFFKILRGENHCGIESEIVAGIPR 331
>sp|P43233|CATB_CHICK Cathepsin B precursor (Cathepsin B1) [Contains: Cathepsin B light
chain; Cathepsin B heavy chain]
Length = 340
Score = 375 bits (963), Expect = e-104
Identities = 166/267 (62%), Positives = 196/267 (73%), Gaps = 1/267 (0%)
Frame = +2
Query: 65 KLPKRKPLLNRVRLPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSN 244
K P+R + LP TFD R QWP C +I EIRDQ +CGSCWAFGAVEAI+DR C+H+N
Sbjct: 67 KAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTN 126
Query: 245 GTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPK 424
+ +SAEDLL+CCGF CG GCNGG+PSGAW YW GLV+GG Y +H+GC+ Y P
Sbjct: 127 AKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVSGGLYDSHVGCRAYTIPP 186
Query: 425 CSHHVIGPYPNCTGE-FPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILT 601
C HHV G P CTGE TP+C + C+ GYS +Y EDK YG +SY V +++ IM EI
Sbjct: 187 CEHHVNGSRPPCTGEGGETPRCSRHCEPGYSPSYKEDKHYGITSYGVPRSEKEIMAEIYK 246
Query: 602 NGPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWG 781
NGPVE AF VY DF YKSGVYQHVSG +GGHAI+ILGWGVEN TPYWL ANSWN WG
Sbjct: 247 NGPVEGAFIVYEDFLMYKSGVYQHVSGEQVGGHAIRILGWGVENGTPYWLAANSWNTDWG 306
Query: 782 DNGYFKILRGSDECGIEDEVVAGIPKL 862
G+FKILRG D CGIE E+VAG+P++
Sbjct: 307 ITGFFKILRGEDHCGIESEIVAGVPRM 333
>sp|P43157|CYSP_SCHJA Cathepsin B-like cysteine proteinase precursor (Antigen Sj31)
Length = 342
Score = 358 bits (920), Expect = 9e-99
Identities = 162/291 (55%), Positives = 206/291 (70%), Gaps = 5/291 (1%)
Frame = +2
Query: 2 RFQSISDIRKVLGVMKDPNNFKLPKRKPLLNR----VRLPTTFDARVQWPKCKSIGEIRD 169
RF S+ D R ++G K+ K R+P ++ V +P+ FD+R +WP CKSI +IRD
Sbjct: 53 RFHSLDDARILMGARKEDAEMKR-NRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRD 111
Query: 170 QSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHY 349
QS CGSCWAFGAVEA+TDR CI S G Q+ +SA DL++CC CGDGC GGFP AW Y
Sbjct: 112 QSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLISCCK-DCGDGCQGGFPGVAWDY 170
Query: 350 WVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNC-TGEFPTPKCKKACQAGYSKTYA 526
WV G+VTGG H GCQ Y FPKC HH G YP C T + TP+CK+ CQ GY Y
Sbjct: 171 WVKRGIVTGGSKENHTGCQPYPFPKCEHHTKGKYPACGTKIYKTPQCKQTCQKGYKTPYE 230
Query: 527 EDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAI 706
+DK YG SY+V +N++ I ++I+ GPVEAAF VY DF +YKSG+Y+HV+G ++GGHAI
Sbjct: 231 QDKHYGDESYNVQNNEKVIQRDIMMYGPVEAAFDVYEDFLNYKSGIYRHVTGSIVGGHAI 290
Query: 707 KILGWGVENNTPYWLVANSWNPTWGDNGYFKILRGSDECGIEDEVVAGIPK 859
+I+GWGVE TPYWL+ANSWN WG+ G F+++RG DEC IE +VVAG+ K
Sbjct: 291 RIIGWGVEKRTPYWLIANSWNEDWGEKGLFRMVRGRDECSIESDVVAGLIK 341
>sp|P25792|CYSP_SCHMA Cathepsin B-like cysteine proteinase precursor (Antigen Sm31)
Length = 340
Score = 346 bits (888), Expect = 5e-95
Identities = 157/288 (54%), Positives = 203/288 (70%), Gaps = 5/288 (1%)
Frame = +2
Query: 2 RFQSISDIRKVLGVMKDPNNFKLPKRKPLLNR----VRLPTTFDARVQWPKCKSIGEIRD 169
RF S+ D R +G ++ + + KR+P ++ V +P+ FD+R +WP CKSI IRD
Sbjct: 52 RFHSLDDARIQMGARREEPDLRR-KRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRD 110
Query: 170 QSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLLTCCGFRCGDGCNGGFPSGAWHY 349
QS CGSCW+FGAVEA++DR CI S G Q +SA DLLTCC CG GC GG AW Y
Sbjct: 111 QSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCE-SCGLGCEGGILGPAWDY 169
Query: 350 WVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCTGE-FPTPKCKKACQAGYSKTYA 526
WV +G+VT H GC+ Y FPKC HH G YP C + + TP+CK+ CQ Y Y
Sbjct: 170 WVKEGIVTASSKENHTGCEPYPFPKCEHHTKGKYPPCGSKIYNTPRCKQTCQRKYKTPYT 229
Query: 527 EDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADFPSYKSGVYQHVSGGMLGGHAI 706
+DK GKSSY+V ++++AI +EI+ GPVEA+F+VY DF +YKSG+Y+H++G LGGHAI
Sbjct: 230 QDKHRGKSSYNVKNDEKAIQKEIMKYGPVEASFTVYEDFLNYKSGIYKHITGEALGGHAI 289
Query: 707 KILGWGVENNTPYWLVANSWNPTWGDNGYFKILRGSDECGIEDEVVAG 850
+I+GWGVEN TPYWL+ANSWN WG+NGYF+I+RG DEC IE EV+AG
Sbjct: 290 RIIGWGVENKTPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVIAG 337
>sp|P43510|CPR6_CAEEL Cathepsin B-like cysteine proteinase 6 precursor (Cysteine
protease-related 6)
Length = 379
Score = 317 bits (812), Expect = 3e-86
Identities = 145/258 (56%), Positives = 185/258 (71%), Gaps = 5/258 (1%)
Frame = +2
Query: 104 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 283
+P +FD+R WPKC SI IRDQS+CGSCWAFGAVEA++DR CI S+G +SA+DLL
Sbjct: 105 IPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLL 164
Query: 284 TCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHV----IGPY 451
+CC CG GCNGG P AW YWV DG+VTG Y A+ GC+ Y FP C HH P
Sbjct: 165 SCCK-SCGFGCNGGDPLAAWRYWVKDGIVTGSNYTANNGCKPYPFPPCEHHSKKTHFDPC 223
Query: 452 PNCTGEFPTPKCKKACQAGYS-KTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFS 628
P+ +PTPKC+K C + Y+ KTY+EDK +G S+Y V + +AI +E++T+GP+E AF
Sbjct: 224 PHDL--YPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAFE 281
Query: 629 VYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKILR 808
VY DF +Y GVY H G + GGHA+K++GWG+++ PYW VANSWN WG++G+F+ILR
Sbjct: 282 VYEDFLNYDGGVYVHTGGKLGGGHAVKLIGWGIDDGIPYWTVANSWNTDWGEDGFFRILR 341
Query: 809 GSDECGIEDEVVAGIPKL 862
G DECGIE VV GIPKL
Sbjct: 342 GVDECGIESGVVGGIPKL 359
>sp|P43509|CPR5_CAEEL Cathepsin B-like cysteine proteinase 5 precursor (Cysteine
protease-related 5)
Length = 344
Score = 313 bits (803), Expect = 3e-85
Identities = 145/259 (55%), Positives = 177/259 (68%), Gaps = 6/259 (2%)
Frame = +2
Query: 104 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 283
+P FDAR QWP C SI IRDQS+CGSCWAF A EAI+DR CI SNG +S+EDLL
Sbjct: 82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLL 141
Query: 284 TCCG--FRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIG-PYP 454
+CC F CG+GC GG+P AW +WV GLVTGG Y GC+ Y+ C V G +P
Sbjct: 142 SCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWP 201
Query: 455 NCTGEF-PTPKCKKACQA--GYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAF 625
C + PTPKC +C + Y+ Y +DK +G ++Y+V + I EILTNGP+E AF
Sbjct: 202 ACPEDTEPTPKCVDSCTSKNNYATPYLQDKHFGSTAYAVGKKVEQIQTEILTNGPIEVAF 261
Query: 626 SVYADFPSYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKIL 805
+VY DF Y +GVY H +G LGGHA+KILGWGV+N TPYWLVANSWN WG+ GYF+I+
Sbjct: 262 TVYEDFYQYTTGVYVHTAGASLGGHAVKILGWGVDNGTPYWLVANSWNVAWGEKGYFRII 321
Query: 806 RGSDECGIEDEVVAGIPKL 862
RG +ECGIE VAGIP L
Sbjct: 322 RGLNECGIEHSAVAGIPDL 340
>sp|P25807|CPR1_CAEEL Gut-specific cysteine proteinase precursor
Length = 329
Score = 308 bits (790), Expect = 1e-83
Identities = 143/253 (56%), Positives = 176/253 (69%)
Frame = +2
Query: 104 LPTTFDARVQWPKCKSIGEIRDQSNCGSCWAFGAVEAITDRYCIHSNGTQTPRISAEDLL 283
+P TFD+R QW +CKSI IRDQ+ CGSCWAFGA E I+DR CI + G Q P IS +DLL
Sbjct: 85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLL 144
Query: 284 TCCGFRCGDGCNGGFPSGAWHYWVTDGLVTGGEYGAHLGCQDYAFPKCSHHVIGPYPNCT 463
+CCG CG+GC GG+P A +W + G+VTGG+Y GC+ Y C+ NC
Sbjct: 145 SCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHG-AGCKPYPIAPCTSG------NCP 197
Query: 464 GEFPTPKCKKACQAGYSKTYAEDKQYGKSSYSVDSNQQAIMQEILTNGPVEAAFSVYADF 643
E TP C +CQ+GYS YA+DK +G S+Y+V N +I EI NGPVEAAFSVY DF
Sbjct: 198 -ESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDF 256
Query: 644 PSYKSGVYQHVSGGMLGGHAIKILGWGVENNTPYWLVANSWNPTWGDNGYFKILRGSDEC 823
YKSGVY+H +G LGGHAIKI+GWG E+ +PYWLVANSW WG++G+FKI RG D+C
Sbjct: 257 YKYKSGVYKHTAGKYLGGHAIKIIGWGTESGSPYWLVANSWGVNWGESGFFKIYRGDDQC 316
Query: 824 GIEDEVVAGIPKL 862
GIE VVAG K+
Sbjct: 317 GIESAVVAGKAKV 329
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,093,923
Number of Sequences: 369166
Number of extensions: 2591812
Number of successful extensions: 7902
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7660
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)