Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G23
(808 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47460|HMW2_MYCGE Cytadherence high molecular weight pro... 50 9e-06
sp|Q7Z6B0|GGABP_HUMAN GGA-binding partner (p56 accessory pr... 46 1e-04
sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle 45 3e-04
sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosome ... 44 4e-04
sp|Q07283|TRHY_HUMAN Trichohyalin 44 4e-04
sp|O97593|SMC1A_BOVIN Structural maintenance of chromosome ... 44 4e-04
sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosome ... 44 4e-04
sp|Q5RCA7|GGABP_PONPY GGA-binding partner 44 7e-04
sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosome 1-... 44 7e-04
sp|P12845|MYO2_CAEEL Myosin-2 (Myosin heavy chain C) (MHC C) 43 9e-04
>sp|P47460|HMW2_MYCGE Cytadherence high molecular weight protein 2 (Cytadherence accessory
protein 2)
Length = 1805
Score = 49.7 bits (117), Expect = 9e-06
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 27/171 (15%)
Frame = +1
Query: 25 NSKWLYEDL-RIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNK 201
N++ + DL ++ ++ ++ + QN + D+LK + ++ + K L+E Q L
Sbjct: 709 NAEVIQADLAQLNQSLNQERSELQNAKQRIADFHNDSLKKLNEYELSLQKRLQELQTLEA 768
Query: 202 QR-------------DLDSLLARKEA------------DAILKENEDRRQKMRLTEAKKL 306
+ +LD L K+A DAI + D+ Q + + +A+
Sbjct: 769 NQKQHSYQNQAYFEGELDKLNREKQAFLNLRKKQTMEVDAIKQRLSDKHQALNMQQAELD 828
Query: 307 TQEH-LATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQEYARKVIEH 456
+ H L A D+D+ S+ ++L ++E QKL+DLE E R+ E+
Sbjct: 829 RKTHELNNAFLNHDADQKSLQDQLATVKETQKLIDLERSALLEKQREFAEN 879
Score = 31.2 bits (69), Expect = 3.5
Identities = 29/137 (21%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Frame = +1
Query: 61 NAIAEKEEKF----QNDETDKEKKRQDTLKSIE------DHRKNTMK---ALEEDQRLNK 201
N + ++ E F ++ + + E+K+ D+L +E H+ N K A + ++ LN+
Sbjct: 350 NKLQQENELFAKHLEHQQNEFEQKQSDSLLKLETEYKALQHKINEFKNESATKSEELLNQ 409
Query: 202 QRDLDSLLARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKI 381
+R+L R+E D +L + L EH + + +N + +
Sbjct: 410 ERELFE--KRREIDTLLTQ-------------ASLEYEHQRESSQLLKDKQNEVKQHFQN 454
Query: 382 MEENQKLLDLEEGVFQE 432
+E +K LD E + +
Sbjct: 455 LEYAKKELDKERNLLDQ 471
>sp|Q7Z6B0|GGABP_HUMAN GGA-binding partner (p56 accessory protein)
Length = 441
Score = 45.8 bits (107), Expect = 1e-04
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Frame = +1
Query: 109 KEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEA--DAILKENEDRR--- 273
KEK ++ ++ ++ ++ K LEE+++ NK+ + + KEA DA+LK E+ R
Sbjct: 270 KEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKVVEEERKNL 329
Query: 274 QKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQEYARKVIE 453
+K E + EH + + + ++ + KI +E K +EE Q+ + K +E
Sbjct: 330 EKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEE---QKRSEKAVE 386
Query: 454 HCEKGGRN 477
K R+
Sbjct: 387 EAVKRTRD 394
Score = 37.4 bits (85), Expect = 0.049
Identities = 29/120 (24%), Positives = 58/120 (48%)
Frame = +1
Query: 43 EDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSL 222
E+ R RN KE + +KE + LK +E+ RKN KA E++ L K
Sbjct: 293 EEERQRN----KEALVSAAKLEKEAMKDAVLKVVEEERKNLEKAHAEERELWKTEHAKD- 347
Query: 223 LARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKL 402
K + I K +++R+ + T + +E + KA++++ + + ++ ++E ++L
Sbjct: 348 -QEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRL 406
>sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle
Length = 2116
Score = 44.7 bits (104), Expect = 3e-04
Identities = 33/137 (24%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Frame = +1
Query: 67 IAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALE-----EDQRLNKQRDLDSLLAR 231
+ E E+ ++ +++ E+ ++ +ED R+N K ++ ED + N QR++ R
Sbjct: 1907 LRETVEEAEDSKSEAEQSKRLVELELEDARRNLQKEIDAKEIAEDAKSNLQREIVEAKGR 1966
Query: 232 KEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDL 411
E ++I + N DR +K E LT + A KA + + + ++ E +K +
Sbjct: 1967 LEEESIARTNSDRSRKRLEAEIDALTAQVDAEQKAKNQQIKENKKIETELKEYRKKFGES 2026
Query: 412 EEGVFQEYARKVIEHCE 462
E+ +E+ V+E E
Sbjct: 2027 EKTKTKEFL--VVEKLE 2041
Score = 34.3 bits (77), Expect = 0.41
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = +1
Query: 76 KEEKFQ-NDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAIL 252
K+ K++ NDE + + + +ED LE++Q Q D E D +
Sbjct: 1821 KDTKYKLNDEAATKTQTEIGAAKLEDQIDELRSKLEQEQAKATQADKSKKTLEGEIDNLR 1880
Query: 253 KENEDR-RQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLE 414
+ ED + KMRL + K+ + L + + E+S E++++L++LE
Sbjct: 1881 AQIEDEGKIKMRLEKEKRALEGELEELRETVEEAEDSKSE----AEQSKRLVELE 1931
Score = 33.1 bits (74), Expect = 0.92
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 12/153 (7%)
Frame = +1
Query: 31 KWLYEDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNK-QR 207
K E+L+ + E++ + +E +E+K ++TL+ + +K + LEE +R+N Q
Sbjct: 911 KLALENLQNQKRSVEEKVRDLEEELQEEQKLRNTLEKL---KKKYEEELEEMKRVNDGQS 967
Query: 208 DLDSLLARKEADAILKE--------NEDRRQKMRLTEAKKLTQEHLATAKAIKDS---DE 354
D S L K D + KE +E+ + K L + + Q L DS D+
Sbjct: 968 DTISRL-EKIKDELQKEVEELTESFSEESKDKGVLEKTRVRLQSELDDLTVRLDSETKDK 1026
Query: 355 NSMMNKLKIMEENQKLLDLEEGVFQEYARKVIE 453
+ ++ + K +EE +L ++E + E A K+ +
Sbjct: 1027 SELLRQKKKLEE--ELKQVQEALAAETAAKLAQ 1057
Score = 30.8 bits (68), Expect = 4.6
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +1
Query: 94 NDETDKEKKRQDTLKSIEDHRKNTMKALEEDQR------LNKQRDLDSLLARKEADAILK 255
N+E D+EKK +D L + +K + A+ E+ + +++ L L ++E+D
Sbjct: 1100 NNELDEEKKNRDAL----EKKKKALDAMLEEMKDQLESTGGEKKSLYDLKVKQESDMEAL 1155
Query: 256 ENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKL-LDLEE 417
N+ + + + +K+ ++ E + K + ++ +K+ LDLE+
Sbjct: 1156 RNQISELQSTIAKLEKIKSTLEGEVARLQGELEAEQLAKSNVEKQKKKVELDLED 1210
>sp|Q14683|SMC1A_HUMAN Structural maintenance of chromosome 1-like 1 protein (SMC1alpha
protein) (DXS423E protein) (Sb1.8)
Length = 1233
Score = 44.3 bits (103), Expect = 4e-04
Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +1
Query: 76 KEEKFQNDETDKEKKRQDTLKS-IEDHRKNTMKALEEDQRLNKQ-RDLDSLLARKEADAI 249
KE +N E +K+KKR D ++ +++ +K K + E Q++ K+ ++ DS L +K I
Sbjct: 240 KELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYI 299
Query: 250 LKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQ 429
K E+ K++ EA K K+++++ ++ K + E +++L +E+ Q
Sbjct: 300 -KAKENTSHKIKKLEAAK---------KSLQNAQKHYKKRKGDMDELEKEMLSVEKAR-Q 348
Query: 430 EYARKVIEHCEKGGRN 477
E+ ++ E + GR+
Sbjct: 349 EFEERMEEESQSQGRD 364
Score = 34.7 bits (78), Expect = 0.32
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +1
Query: 109 KEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAILKENEDRRQKMRL 288
+E R L D RK M EED + N R + RKEA +E E+ + RL
Sbjct: 156 EEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAK---QEKEEADRYQRL 212
Query: 289 TEAKKLTQEHLATAKAIKDSDENSMMN-----KLKIMEENQKLLDLEEGVFQEYARKV 447
+ Q L K + E +N K K +E+++K +D E +E +++
Sbjct: 213 KDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKEL 270
>sp|Q07283|TRHY_HUMAN Trichohyalin
Length = 1898
Score = 44.3 bits (103), Expect = 4e-04
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 19/146 (13%)
Frame = +1
Query: 73 EKEEKFQNDETDK----------EKKRQDTLKSIED---------HRKNTMKALEEDQRL 195
E+EEK + ETD+ E++ Q L+ D H++ K LEE+QRL
Sbjct: 1282 EREEKRRRQETDRKFREEEQLLQEREEQPLLRQERDRKFREEELLHQEQGRKFLEEEQRL 1341
Query: 196 NKQRDLDSLLARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKL 375
++R+ L ++E L+E R+++R +K +E ++ +D ++
Sbjct: 1342 REERERKFL--KEEQQLRLEE----REQLRQDRDRKFREEEQQLSRQERDRKFREEEQQV 1395
Query: 376 KIMEENQKLLDLEEGVFQEYARKVIE 453
+ E +K L+ E+ + QE RK E
Sbjct: 1396 RRQERERKFLEEEQQLRQERHRKFRE 1421
Score = 40.0 bits (92), Expect = 0.008
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 1/151 (0%)
Frame = +1
Query: 43 EDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSL 222
E+ R R E+EE+ +E++ Q + E+ R+ +K EE++RL ++ +
Sbjct: 501 EERRERWLKLEEEER----REQQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQ 556
Query: 223 LARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKL 402
L R++ + + Q ++ E K+L QE + + + K + Q+L
Sbjct: 557 LRREQEERL-------EQLLKREEEKRLEQERREQRLKREQEERRDQLLKREEERRQQRL 609
Query: 403 -LDLEEGVFQEYARKVIEHCEKGGRNTYPLK 492
+ EE + Q R+ +E E+ R LK
Sbjct: 610 KREQEERLEQRLKREEVERLEQEERRDERLK 640
Score = 39.7 bits (91), Expect = 0.010
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Frame = +1
Query: 31 KWLYEDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRD 210
K+L E+ ++R E E KF+ +E +++ Q+ L+ E +RK + E+++L +R+
Sbjct: 1663 KFLQEEQQLRRQ--ELERKFREEEQLRQETEQEQLRRQERYRK-----ILEEEQLRPERE 1715
Query: 211 LDSLLARKEADAILKENEDRRQ-------KMRLTEAKKLTQEHLATAKAIKDSDENSMMN 369
+ L R+E D +E E RQ + + ++ K +E L + +
Sbjct: 1716 -EQQLRRQERDRKFREEEQLRQGREEQQLRSQESDRKFREEEQLRQEREEQQLRPQQRDG 1774
Query: 370 KLKIMEENQKLLDLEEGVFQEYARK 444
K + EE +L + E+ + QE R+
Sbjct: 1775 KYRWEEEQLQLEEQEQRLRQERDRQ 1799
Score = 38.5 bits (88), Expect = 0.022
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Frame = +1
Query: 31 KWLYEDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRD 210
K L ++ R + E+EE+ +E++RQ LK ++ R EE +RL ++
Sbjct: 575 KRLEQERREQRLKREQEERRDQLLKREEERRQQRLKREQEERLEQRLKREEVERLEQEER 634
Query: 211 LDSLLARKEAD-----AILK--ENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMN 369
D L R+E + +LK E E+RR + E ++ ++ L ++ +E +
Sbjct: 635 RDERLKREEPEEERRHELLKSEEQEERRHEQLRREQQERREQRLK-----REEEEERLEQ 689
Query: 370 KLKIMEENQKLLDLEEGVFQEYARKVIE 453
+LK E ++ QE AR+ I+
Sbjct: 690 RLKREHEEERREQELAEEEQEQARERIK 717
Score = 38.1 bits (87), Expect = 0.029
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Frame = +1
Query: 73 EKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAIL 252
E+E++ + E D+ K R+ L+S E RK LEE+Q+L++Q+ L ++
Sbjct: 1445 EEEQQLRRQERDR-KFREQELRSQEPERK----FLEEEQQLHRQQRQRKFLQEEQQLRRQ 1499
Query: 253 KENEDRRQ--KMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEE 417
+ + RRQ + E ++L QE + ++ D + + K+ + Q+ +E+
Sbjct: 1500 ERGQQRRQDRDRKFREEEQLRQEREEQQLSRQERDRKFRLEEQKVRRQEQERKFMED 1556
Score = 35.4 bits (80), Expect = 0.18
Identities = 20/108 (18%), Positives = 52/108 (48%)
Frame = +1
Query: 73 EKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAIL 252
E+ E+ + E +E++ Q + E+ R+ ++ +E++R +Q + R+E
Sbjct: 320 ERREQQERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRR 379
Query: 253 KENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQ 396
++ E+RR++ E + ++ L + ++ E + + ++ E Q
Sbjct: 380 EQEEERREQQLRREQQLRREQQLRREQQLR--REQQLRREQQLRREQQ 425
Score = 33.5 bits (75), Expect = 0.70
Identities = 30/148 (20%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Frame = +1
Query: 73 EKEEKFQNDETDKEKK------RQDTLKSIEDH-----RKNTMKALEEDQRLNKQRDLDS 219
++E++F +E +KE++ R+ L+ +E+ R+ + EE+ L + ++
Sbjct: 823 QREQRFLPEEEEKEQRGRQRREREKELQFLEEEEQLQRRERAQQLQEEEDGLQEDQERRR 882
Query: 220 LLARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMM---NKLKIMEE 390
R++ + E+R+++ AK QE L + + +E + + + +E
Sbjct: 883 QEQRRDQKWRWQLEEERKRRRHTLYAKPALQEQLRKEQQLLQEEEEELQREEREKRRRQE 942
Query: 391 NQKLLDLEEGVFQEYARKVIEHCEKGGR 474
++ EE + QE + + E EK R
Sbjct: 943 QERQYREEEQLQQEEEQLLREEREKRRR 970
Score = 33.1 bits (74), Expect = 0.92
Identities = 16/84 (19%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 67 IAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQR-DLDSLLARKEAD 243
+ ++EEK Q +E ++++ Q+ + + + ++ +++ +QR + L RK+ +
Sbjct: 253 LRKEEEKLQEEEPQRQRELQEEEEQLRKLERQELRRERQEEEQQQQRLRREQQLRRKQEE 312
Query: 244 AILKENEDRRQKMRLTEAKKLTQE 315
++ E+RR++ E ++ +E
Sbjct: 313 ERREQQEERREQQERREQQEERRE 336
Score = 30.4 bits (67), Expect = 5.9
Identities = 18/118 (15%), Positives = 53/118 (44%)
Frame = +1
Query: 43 EDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSL 222
++LR E++++ E +K+++ + ++ R+ + E+ + +Q+
Sbjct: 284 QELRRERQEEEQQQQRLRREQQLRRKQEEERREQQEERREQQERREQQEERREQQLRREQ 343
Query: 223 LARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQ 396
R+E ++ E+RR++ E ++ +E + ++ E + + ++ E Q
Sbjct: 344 EERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEERREQQLRREQQLRREQQ 401
>sp|O97593|SMC1A_BOVIN Structural maintenance of chromosome 1-like 1 protein (SMC-protein)
Length = 1233
Score = 44.3 bits (103), Expect = 4e-04
Identities = 35/136 (25%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +1
Query: 76 KEEKFQNDETDKEKKRQDTLKS-IEDHRKNTMKALEEDQRLNKQ-RDLDSLLARKEADAI 249
KE +N E +K+KKR D ++ +++ +K K + E Q++ K+ ++ DS L +K I
Sbjct: 240 KELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYI 299
Query: 250 LKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQ 429
K E+ K++ EA K K+++++ ++ K + E +++L +E+ Q
Sbjct: 300 -KAKENTSHKIKKLEAAK---------KSLQNAQKHYKKRKGDMDELEKEMLSVEKAR-Q 348
Query: 430 EYARKVIEHCEKGGRN 477
E+ ++ E + GR+
Sbjct: 349 EFEERMEEESQSQGRD 364
Score = 34.7 bits (78), Expect = 0.32
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +1
Query: 109 KEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAILKENEDRRQKMRL 288
+E R L D RK M EED + N R + RKEA +E E+ + RL
Sbjct: 156 EEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAK---QEKEEADRYQRL 212
Query: 289 TEAKKLTQEHLATAKAIKDSDENSMMN-----KLKIMEENQKLLDLEEGVFQEYARKV 447
+ Q L K + E +N K K +E+++K +D E +E +++
Sbjct: 213 KDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKEL 270
>sp|Q9CU62|SMC1A_MOUSE Structural maintenance of chromosome 1-like 1 protein (SMC1alpha
protein) (Chromosome segregation protein SmcB) (Sb1.8)
Length = 1233
Score = 44.3 bits (103), Expect = 4e-04
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = +1
Query: 76 KEEKFQNDETDKEKKRQDTLKS-IEDHRKNTMKALEEDQRLNKQ-RDLDSLLARKEADAI 249
KE +N E +K+KKR D ++ +++ +K K + E Q++ K+ ++ DS L +K I
Sbjct: 240 KELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYI 299
Query: 250 LKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQ 429
K E+ K++ EA K + +H + D M+E +K + E Q
Sbjct: 300 -KAKENTSHKIKKLEAAKKSLQHAQKHYKKRKGD----------MDELEKEMLSVEKARQ 348
Query: 430 EYARKVIEHCEKGGRN 477
E+ ++ E + GR+
Sbjct: 349 EFEERMEEESQSQGRD 364
Score = 34.7 bits (78), Expect = 0.32
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Frame = +1
Query: 109 KEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAILKENEDRRQKMRL 288
+E R L D RK M EED + N R + RKEA +E E+ + RL
Sbjct: 156 EEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAK---QEKEEADRYQRL 212
Query: 289 TEAKKLTQEHLATAKAIKDSDENSMMN-----KLKIMEENQKLLDLEEGVFQEYARKV 447
+ Q L K + E +N K K +E+++K +D E +E +++
Sbjct: 213 KDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKEL 270
>sp|Q5RCA7|GGABP_PONPY GGA-binding partner
Length = 405
Score = 43.5 bits (101), Expect = 7e-04
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Frame = +1
Query: 100 ETDKE----KKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEA--DAILKEN 261
+T+KE K ++ ++ ++ ++ K LEE+++ NK+ + + KEA DA+LK
Sbjct: 227 DTEKELLKGKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKVV 286
Query: 262 EDRR---QKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQE 432
E+ R +K E + EH + + + ++ + KI +E K +EE Q+
Sbjct: 287 EEERKNSEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEE---QK 343
Query: 433 YARKVIEHCEKGGRN 477
+ K +E K R+
Sbjct: 344 RSEKAVEEAVKRTRD 358
Score = 38.1 bits (87), Expect = 0.029
Identities = 29/120 (24%), Positives = 59/120 (49%)
Frame = +1
Query: 43 EDLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSL 222
E+ R RN KE + +KE + LK +E+ RKN+ KA E++ L K
Sbjct: 257 EEERQRN----KEALVSAAKLEKEAMKDAVLKVVEEERKNSEKAHAEERELWKTEHAKD- 311
Query: 223 LARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKL 402
K + I K +++R+ + T + +E + KA++++ + + ++ ++E ++L
Sbjct: 312 -QEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRL 370
Score = 33.5 bits (75), Expect = 0.70
Identities = 34/167 (20%), Positives = 69/167 (41%), Gaps = 21/167 (12%)
Frame = +1
Query: 46 DLRIRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDH---RKNTMKALEED---------- 186
++++R I+ E K + E +K++ +QD +E H K +K E++
Sbjct: 131 NIQLRQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKE 190
Query: 187 -QRLNKQRDLDSLLARKEADAILKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSM 363
Q +KQ D A EA +I+ + ++ + + + +K + I+ S E
Sbjct: 191 LQEKHKQELEDMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKGKIKEALIQQSQEQKE 250
Query: 364 MNKLKIMEENQK-------LLDLEEGVFQEYARKVIEHCEKGGRNTY 483
+ + + EE Q+ LE+ ++ KV+E K +
Sbjct: 251 ILEKCLEEERQRNKEALVSAAKLEKEAMKDAVLKVVEEERKNSEKAH 297
>sp|Q9Z1M9|SMC1A_RAT Structural maintenance of chromosome 1-like 1 protein (SMC-protein)
Length = 1233
Score = 43.5 bits (101), Expect = 7e-04
Identities = 35/136 (25%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Frame = +1
Query: 76 KEEKFQNDETDKEKKRQDTLKS-IEDHRKNTMKALEEDQRLNKQ-RDLDSLLARKEADAI 249
KE +N E +K+KKR D ++ +++ +K K + E Q++ K+ ++ DS L +K I
Sbjct: 240 KELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMREQQQIEKEIKEKDSELNQKRPQYI 299
Query: 250 LKENEDRRQKMRLTEAKKLTQEHLATAKAIKDSDENSMMNKLKIMEENQKLLDLEEGVFQ 429
K E+ K++ EA K K++++ ++ K + E +++L +E+ Q
Sbjct: 300 -KAKENTSHKIKKLEAAK---------KSLQNRQKHYKKRKGDMDELEKEMLSVEKAR-Q 348
Query: 430 EYARKVIEHCEKGGRN 477
E+ ++ E + GR+
Sbjct: 349 EFEERMEEESQSQGRD 364
Score = 32.3 bits (72), Expect = 1.6
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +1
Query: 109 KEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARKEADAILKENEDRRQKMRL 288
+E R L D RK M EED + N R + RKEA +E E+ + L
Sbjct: 156 EEISRSGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAK---QEKEEADRYQAL 212
Query: 289 TEAKKLTQEHLATAKAIKDSDENSMMN-----KLKIMEENQKLLDLEEGVFQEYARKV 447
+ Q L K + E +N K K +E+++K +D E +E +++
Sbjct: 213 KDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKEL 270
>sp|P12845|MYO2_CAEEL Myosin-2 (Myosin heavy chain C) (MHC C)
Length = 1947
Score = 43.1 bits (100), Expect = 9e-04
Identities = 39/145 (26%), Positives = 67/145 (46%), Gaps = 18/145 (12%)
Frame = +1
Query: 55 IRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARK 234
I IAEKEE+F+N K Q T+ SI+ + KA E R+ K+ + D
Sbjct: 1588 IEKRIAEKEEEFEN----HRKVHQQTIDSIQATLDSETKAKSELFRVKKKLEADINELEI 1643
Query: 235 EADAILKENEDRRQKMR--LTEAKKLTQ-------------EHLATAK---AIKDSDENS 360
D K NED ++ +R L + ++L Q EHL A+ A+ ++
Sbjct: 1644 ALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQKRREEFREHLLAAERKLAVAKQEQEE 1703
Query: 361 MMNKLKIMEENQKLLDLEEGVFQEY 435
++ KL+ +E +++++ QE+
Sbjct: 1704 LIVKLEALERARRVVESSVKEHQEH 1728
Score = 32.0 bits (71), Expect = 2.0
Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 17/150 (11%)
Frame = +1
Query: 55 IRNAIAEKEEKFQNDETDKEKKRQDTLKSIEDHRKNTMKALEEDQRLNKQRDLDSLLARK 234
+++ + ++EEK + + E+ ++T + + E ++R+ + L K
Sbjct: 875 LKDTVVQEEEKKRQLQEGAERLNKETADLLAQLEASKGSTREVEERMTAMNEQKVALEGK 934
Query: 235 EADAILKENEDRRQKMRLTEAKKLTQEHLATAK--------------AIKDSDEN---SM 363
ADA K + + + + + KKL + A K A K++ E+ ++
Sbjct: 935 LADASKKLEVEEARAVEINKQKKLVEAECADLKKNCQDVDLSLRKVEAEKNAKEHQIRAL 994
Query: 364 MNKLKIMEENQKLLDLEEGVFQEYARKVIE 453
++++ +EN L+ E +E +K+ E
Sbjct: 995 QDEMRQQDENISKLNKERKNQEEQNKKLTE 1024
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,024,139
Number of Sequences: 369166
Number of extensions: 1152611
Number of successful extensions: 6142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5979
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)