Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G22-2
(430 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O23515|RL15_ARATH 60S ribosomal protein L15 168 4e-42
sp|O82528|RL15_PETHY 60S ribosomal protein L15 166 2e-41
sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15 >gi|47117719... 163 1e-40
sp|P05748|RL15A_YEAST 60S ribosomal protein L15-A (YL10) (L... 162 2e-40
sp|P54780|RL15B_YEAST 60S ribosomal protein L15-B (YL10) (L... 162 3e-40
sp|O65050|RL15A_PICMA 60S ribosomal protein L15-1 162 4e-40
sp|Q8X034|RL15_NEUCR 60S ribosomal protein L15 160 1e-39
sp|Q7T2N4|RL15_SILME 60S ribosomal protein L15 160 1e-39
sp|Q7T3N2|RL15_MONAL 60S ribosomal protein L15 160 1e-39
sp|Q7T3P1|RL15_ANGJA 60S ribosomal protein L15 160 1e-39
>sp|O23515|RL15_ARATH 60S ribosomal protein L15
Length = 204
Score = 168 bits (426), Expect = 4e-42
Identities = 81/143 (56%), Positives = 101/143 (70%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KY+SE++R KQSDVM + R+RC E+RQ SIVR+ +PTRPD+ARRLGYKAKQGFV+
Sbjct: 3 AYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
YGKP N+GV QLK QRS +++AEER GRK LRV+NSYW+
Sbjct: 63 RVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLN 122
Query: 362 EDSTFLFVEVICVDPAHPAIRVD 430
EDST+ + E+I VDPAH A+R D
Sbjct: 123 EDSTYKYYEIILVDPAHNAVRND 145
>sp|O82528|RL15_PETHY 60S ribosomal protein L15
Length = 204
Score = 166 bits (420), Expect = 2e-41
Identities = 80/140 (57%), Positives = 99/140 (70%)
Frame = +2
Query: 11 YISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIXXXX 190
Y+SE++R KQSDVM + R+RC E+RQ SIVRV++PTRPD+ARRLGYKAKQG+V+
Sbjct: 6 YVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVR 65
Query: 191 XXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVGEDS 370
YGKP N+GV QLK QR+ +++AEER GRK LRVLNSYW+ EDS
Sbjct: 66 VKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDS 125
Query: 371 TFLFVEVICVDPAHPAIRVD 430
T+ + EVI VD AH AIR D
Sbjct: 126 TYKYFEVILVDQAHAAIRND 145
>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15
sp|P61314|RL15_RAT 60S ribosomal protein L15
sp|Q5NVE0|RL15_PONPY 60S ribosomal protein L15
sp|P61313|RL15_HUMAN 60S ribosomal protein L15
Length = 204
Score = 163 bits (413), Expect = 1e-40
Identities = 82/141 (58%), Positives = 99/141 (70%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KYI E++R KQSDVM + R+RC ++RQ ++ R +PTRPD+ARRLGYKAKQG+VI
Sbjct: 3 AYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
ATYGKPV+ GVNQLK RS Q++AEER GR +LRVLNSYWVG
Sbjct: 63 RIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVG 122
Query: 362 EDSTFLFVEVICVDPAHPAIR 424
EDST+ F EVI +DP H AIR
Sbjct: 123 EDSTYKFFEVILIDPFHKAIR 143
>sp|P05748|RL15A_YEAST 60S ribosomal protein L15-A (YL10) (L13) (RP15R) (YP18)
Length = 204
Score = 162 bits (411), Expect = 2e-40
Identities = 83/143 (58%), Positives = 100/143 (69%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KY+ E+ R KQSDV+ + R+R E+RQ I R ++PTRPD+ARRLGYKAKQGFVI
Sbjct: 3 AYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
ATYGKP N+GVN+LK QRS +A AEERVGR+ A+LRVLNSYWV
Sbjct: 63 RVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVN 122
Query: 362 EDSTFLFVEVICVDPAHPAIRVD 430
+DST+ + EVI VDP H AIR D
Sbjct: 123 QDSTYKYFEVILVDPQHKAIRRD 145
>sp|P54780|RL15B_YEAST 60S ribosomal protein L15-B (YL10) (L13) (RP15R) (YP18)
Length = 204
Score = 162 bits (410), Expect = 3e-40
Identities = 83/143 (58%), Positives = 100/143 (69%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KY+ E+ R KQSDV+ + R+R E+RQ I R ++PTRPD+ARRLGYKAKQGFVI
Sbjct: 3 AYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
ATYGKP N+GVN+LK QRS +A AEERVGR+ A+LRVLNSYWV
Sbjct: 63 RVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVN 122
Query: 362 EDSTFLFVEVICVDPAHPAIRVD 430
+DST+ + EVI VDP H AIR D
Sbjct: 123 QDSTYKYFEVILVDPQHKAIRRD 145
>sp|O65050|RL15A_PICMA 60S ribosomal protein L15-1
Length = 204
Score = 162 bits (409), Expect = 4e-40
Identities = 78/143 (54%), Positives = 99/143 (69%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KYI E+++ KQSDVM + R+RC EFRQ IVRV++P+RPD+ARRLGYKAKQG+V+
Sbjct: 3 AYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
YGKP N+G+ QLK QRS +++AEER GRK LRVLNSYW+
Sbjct: 63 RVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWIN 122
Query: 362 EDSTFLFVEVICVDPAHPAIRVD 430
+DST+ + E+I VD AH AIR D
Sbjct: 123 QDSTYKYYEIILVDQAHSAIRKD 145
>sp|Q8X034|RL15_NEUCR 60S ribosomal protein L15
Length = 203
Score = 160 bits (405), Expect = 1e-39
Identities = 80/141 (56%), Positives = 99/141 (70%)
Frame = +2
Query: 8 KYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIXXX 187
KY+ E+ + KQSDV+ + R+RC E RQ I R S+P+RPD+ARRLGYKAKQG+VI
Sbjct: 5 KYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRA 64
Query: 188 XXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVGED 367
ATYGKP N+GVNQLK QRS ++ AEERVGR+ A+LRVLNSYW+ +D
Sbjct: 65 RVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQD 124
Query: 368 STFLFVEVICVDPAHPAIRVD 430
ST+ + EVI VDP H AIR D
Sbjct: 125 STYKYFEVILVDPQHKAIRRD 145
>sp|Q7T2N4|RL15_SILME 60S ribosomal protein L15
Length = 204
Score = 160 bits (405), Expect = 1e-39
Identities = 81/141 (57%), Positives = 97/141 (68%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KY+ E++R KQSDVM + R+RC ++RQ ++ R +PTRPD+ARRLGYKAKQG+VI
Sbjct: 3 ASKYMQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
ATYGKPV+ GVNQLK RS Q+IAEER GR LRVLNSYWVG
Sbjct: 63 RVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSIAEERAGRHCGGLRVLNSYWVG 122
Query: 362 EDSTFLFVEVICVDPAHPAIR 424
EDST+ F EVI +D H AIR
Sbjct: 123 EDSTYKFFEVILIDTFHKAIR 143
>sp|Q7T3N2|RL15_MONAL 60S ribosomal protein L15
Length = 204
Score = 160 bits (405), Expect = 1e-39
Identities = 79/141 (56%), Positives = 99/141 (70%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A +Y+ E++R KQSDVM + R+RC ++RQ ++ R +PTRPD+ARRLGYKAKQG+VI
Sbjct: 3 AYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYVIY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
ATYGKPV+ GVNQ+K RS Q++AEER GR +LRVLNSYWVG
Sbjct: 63 RVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGALRVLNSYWVG 122
Query: 362 EDSTFLFVEVICVDPAHPAIR 424
EDST+ F EVI +DP H AIR
Sbjct: 123 EDSTYKFFEVILIDPFHKAIR 143
>sp|Q7T3P1|RL15_ANGJA 60S ribosomal protein L15
Length = 204
Score = 160 bits (405), Expect = 1e-39
Identities = 80/143 (55%), Positives = 98/143 (68%)
Frame = +2
Query: 2 ADKYISEIYRHKQSDVMSYQNRIRCCEFRQTESIVRVSKPTRPDRARRLGYKAKQGFVIX 181
A KY+ E++R KQSDVM + R+RC ++RQ + R +PTRPD+ARRLGYKAKQG+VI
Sbjct: 3 AYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSGLHRAPRPTRPDKARRLGYKAKQGYVIY 62
Query: 182 XXXXXXXXXXXXXXXXATYGKPVNEGVNQLKNQRSNQAIAEERVGRKFASLRVLNSYWVG 361
ATYGKPV+ GVNQ+K RS Q+ AEER GR +LRVLNSYWVG
Sbjct: 63 RIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYWVG 122
Query: 362 EDSTFLFVEVICVDPAHPAIRVD 430
EDST+ F EVI +DP H A+R D
Sbjct: 123 EDSTYKFFEVILIDPFHKAVRRD 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,923,913
Number of Sequences: 369166
Number of extensions: 658113
Number of successful extensions: 1734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)