Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G13
(335 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinon... 151 5e-37
sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquin... 150 7e-37
sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinon... 150 7e-37
sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquin... 149 2e-36
sp|Q11190|ETFD_CAEEL Probable electron transfer flavoprotei... 145 3e-35
sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquin... 125 2e-29
sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotei... 124 9e-29
sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotei... 96 3e-20
sp|Q08822|ETFD_YEAST Probable electron transfer flavoprotei... 95 6e-20
sp|P26485|FIXX_AZOCA Ferredoxin-like protein 41 0.001
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 607
Score = 151 bits (381), Expect = 5e-37
Identities = 68/86 (79%), Positives = 77/86 (89%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGER-NLVISAQNCIHCKT 178
DQPAHLTLKDDSVP N NL+IYDGPEQRFCPAGVYE+V E+G+ L I+AQNC+HCKT
Sbjct: 522 DQPAHLTLKDDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKT 581
Query: 179 CDIKDPTQNINWVTPEGGGGPSYSGM 256
CDIKDP+QNINWV PEGGGGP+Y+GM
Sbjct: 582 CDIKDPSQNINWVVPEGGGGPAYNGM 607
>sp|Q921G7|ETFD_MOUSE Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 616
Score = 150 bits (380), Expect = 7e-37
Identities = 67/86 (77%), Positives = 77/86 (89%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGER-NLVISAQNCIHCKT 178
DQPAHLTLKDDS+P N NL+IYDGPEQRFCPAGVYE+V E+G+ L I+AQNC+HCKT
Sbjct: 531 DQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKT 590
Query: 179 CDIKDPTQNINWVTPEGGGGPSYSGM 256
CDIKDP+QNINWV PEGGGGP+Y+GM
Sbjct: 591 CDIKDPSQNINWVVPEGGGGPAYNGM 616
>sp|Q6UPE1|ETFD_RAT Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 616
Score = 150 bits (380), Expect = 7e-37
Identities = 67/86 (77%), Positives = 77/86 (89%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGER-NLVISAQNCIHCKT 178
DQPAHLTLKDDS+P N NL+IYDGPEQRFCPAGVYE+V E+G+ L I+AQNC+HCKT
Sbjct: 531 DQPAHLTLKDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQINAQNCVHCKT 590
Query: 179 CDIKDPTQNINWVTPEGGGGPSYSGM 256
CDIKDP+QNINWV PEGGGGP+Y+GM
Sbjct: 591 CDIKDPSQNINWVVPEGGGGPAYNGM 616
>sp|Q16134|ETFD_HUMAN Electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 617
Score = 149 bits (377), Expect = 2e-36
Identities = 66/86 (76%), Positives = 77/86 (89%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGER-NLVISAQNCIHCKT 178
DQPAHLTL+DDS+P N NL+IYDGPEQRFCPAGVYE+V E+G+ L I+AQNC+HCKT
Sbjct: 532 DQPAHLTLRDDSIPVNRNLSIYDGPEQRFCPAGVYEFVPVEQGDGFRLQINAQNCVHCKT 591
Query: 179 CDIKDPTQNINWVTPEGGGGPSYSGM 256
CDIKDP+QNINWV PEGGGGP+Y+GM
Sbjct: 592 CDIKDPSQNINWVVPEGGGGPAYNGM 617
>sp|Q11190|ETFD_CAEEL Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
(Lethal protein 721)
Length = 597
Score = 145 bits (366), Expect = 3e-35
Identities = 66/87 (75%), Positives = 73/87 (83%), Gaps = 2/87 (2%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGE--RNLVISAQNCIHCK 175
DQPAHLTLK+D VP +VNLA+Y GPE RFCPAGVYE+V +E E + L I+AQNCIHCK
Sbjct: 511 DQPAHLTLKNDQVPLDVNLAVYGGPEARFCPAGVYEFVPSEADESKKRLQINAQNCIHCK 570
Query: 176 TCDIKDPTQNINWVTPEGGGGPSYSGM 256
TCDIKDP QNINWVTPEGGGGP Y GM
Sbjct: 571 TCDIKDPQQNINWVTPEGGGGPKYEGM 597
>sp|Q9HZP5|ETFD_PSEAE Electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO)
(ETF-ubiquinone oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 551
Score = 125 bits (315), Expect = 2e-29
Identities = 54/85 (63%), Positives = 62/85 (72%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGERNLVISAQNCIHCKTC 181
DQP HL L D S+P NL +YD P QR+CPAGVYE V N+ G + I+AQNC+HCKTC
Sbjct: 467 DQPIHLKLADASIPIEKNLPLYDEPAQRYCPAGVYEVVANDDGSKRFQINAQNCVHCKTC 526
Query: 182 DIKDPTQNINWVTPEGGGGPSYSGM 256
DIKDP QNI WV PEG GGP+Y M
Sbjct: 527 DIKDPAQNITWVAPEGTGGPNYPNM 551
>sp|P94132|ETFD_ACIAD Probable electron transfer flavoprotein-ubiquinone oxidoreductase
(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF
dehydrogenase) (Electron-transferring-flavoprotein
dehydrogenase)
Length = 570
Score = 124 bits (310), Expect = 9e-29
Identities = 53/85 (62%), Positives = 65/85 (76%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGERNLVISAQNCIHCKTC 181
+QP+HL L D S+P VNL +D P QR+CPAGVYE V+ +G + I+A NC+HCKTC
Sbjct: 486 NQPSHLKLTDASIPVAVNLPRWDEPAQRYCPAGVYEIVDEGEGNKRFQINAANCVHCKTC 545
Query: 182 DIKDPTQNINWVTPEGGGGPSYSGM 256
DIKDP+QNI WVTPEGGGGP+Y M
Sbjct: 546 DIKDPSQNITWVTPEGGGGPNYPNM 570
>sp|P87111|ETFD_SCHPO Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 632
Score = 95.5 bits (236), Expect = 3e-20
Identities = 46/87 (52%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNVNLAI--YDGPEQRFCPAGVYEYVENEKGE--RNLVISAQNCIH 169
+QP HL D PK+ Y G E +FCPAGVYEYV +E + VI++QNC+H
Sbjct: 547 NQPCHLF---DHRPKDRKSCFETYKGVENKFCPAGVYEYVNDEASSYGKRFVINSQNCVH 603
Query: 170 CKTCDIKDPTQNINWVTPEGGGGPSYS 250
CKTCDIKDP Q I W TP+GG GP Y+
Sbjct: 604 CKTCDIKDPLQGIQWKTPQGGDGPKYT 630
>sp|Q08822|ETFD_YEAST Probable electron transfer flavoprotein-ubiquinone oxidoreductase,
mitochondrial precursor (ETF-QO) (ETF-ubiquinone
oxidoreductase) (ETF dehydrogenase)
(Electron-transferring-flavoprotein dehydrogenase)
Length = 631
Score = 94.7 bits (234), Expect = 6e-20
Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Frame = +2
Query: 2 DQPAHLTLKDDSVPKNV--NLAIYDGPEQRFCPAGVYEYVENEKGE--RNLVISAQNCIH 169
D+P HL + + K + ++ G E RFCPAGVYE+V++EK L I++QNCIH
Sbjct: 543 DEPCHLRVPGQDMVKYAERSFPVWKGVESRFCPAGVYEFVKDEKSPVGTRLQINSQNCIH 602
Query: 170 CKTCDIKDPTQNINWVTPEGGGGPSYS 250
CKTCDIK P Q+I W PEGG GP Y+
Sbjct: 603 CKTCDIKAPRQDITWKVPEGGDGPKYT 629
>sp|P26485|FIXX_AZOCA Ferredoxin-like protein
Length = 97
Score = 40.8 bits (94), Expect = 0.001
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 11 AHLTLKDDSVPKNVNLAIYDGPEQRFCPAGVYEYVENEKGERNLVISAQNCIHCKTCD-I 187
AH+ ++ + P L++ + CPA YE NE G+ + ++ C+ C TC I
Sbjct: 24 AHIKVRPHTEPPPALLSML-----KLCPARCYEL--NEAGQ--VEVTVDGCVECGTCRVI 74
Query: 188 KDPTQNINWVTPEGGGG 238
+P+ +I W P GG G
Sbjct: 75 AEPSGDIEWTYPRGGFG 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,128,604
Number of Sequences: 369166
Number of extensions: 800724
Number of successful extensions: 2143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)