Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G11
(946 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17583|LIN10_CAEEL Abnormal cell lineage protein 10 (Pro... 343 3e-94
sp|O35430|APBA1_RAT Amyloid beta A4 precursor protein-bindi... 306 5e-83
sp|Q02410|APBA1_HUMAN Amyloid beta A4 precursor protein-bin... 303 6e-82
sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-bin... 292 8e-79
sp|Q5RD33|APBA2_PONPY Amyloid beta A4 precursor protein-bin... 292 8e-79
sp|O35431|APBA2_RAT Amyloid beta A4 precursor protein-bindi... 292 8e-79
sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-bin... 290 5e-78
sp|O70248|APBA3_RAT Amyloid beta A4 precursor protein-bindi... 258 2e-68
sp|O96018|APBA3_HUMAN Amyloid beta A4 precursor protein-bin... 257 3e-68
sp|O88888|APBA3_MOUSE Amyloid beta A4 precursor protein-bin... 253 4e-67
>sp|O17583|LIN10_CAEEL Abnormal cell lineage protein 10 (Protein lin-10)
Length = 982
Score = 343 bits (881), Expect = 3e-94
Identities = 177/291 (60%), Positives = 220/291 (75%), Gaps = 13/291 (4%)
Frame = +1
Query: 112 PTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKAPDSESQPSVAVDLFIS 291
P LIEG+LFRA YLGSTQ+ ++R SK RM QAQEAV RVKAP+ + QPS +DLFIS
Sbjct: 598 PAVLIEGVLFRARYLGSTQMLCESRGSKAARMAQAQEAVARVKAPEGDVQPSTEIDLFIS 657
Query: 292 SEKILILNTNLS---------EIMMDHNLKTISYIADIGNILVLMARRISHSHQ----SN 432
+EKI++LNT+L +I+MDH L+TISYIADIG+++VLMARR+S SH S+
Sbjct: 658 TEKIMVLNTDLQRISDTDVRQDILMDHALRTISYIADIGDLVVLMARRMSTSHSDESCSD 717
Query: 433 SENREINNQCLNKIICHVFESDEAQLIAQSIGNAFQIAYIEFLKANGIDDPKIFKEVDYQ 612
++ + K+ICHVFESDEA IAQSIG AFQ+AY+EFL+ANGIDDP +++DYQ
Sbjct: 718 GDSSGGGVRKTPKVICHVFESDEASFIAQSIGQAFQVAYVEFLRANGIDDPSYLRQIDYQ 777
Query: 613 DVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGSMLPTVVLANMNPNG 792
+VLN QE+ GDEL MFA K+ KEV++PK+ GE LG+V+VESGWGSMLPTVVLA+MNP G
Sbjct: 778 EVLNSQELLGDELEMFAKKETQKEVVVPKKAGEPLGIVVVESGWGSMLPTVVLAHMNPVG 837
Query: 793 PAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVTVVNCP 945
PAA LNIG+Q+I ING SLVGLPL Q IK K TAV++TVV+ P
Sbjct: 838 PAAHSNKLNIGDQIININGISLVGLPLSAAQTQIKNMKTATAVRMTVVSTP 888
>sp|O35430|APBA1_RAT Amyloid beta A4 precursor protein-binding family A member 1
(Neuron-specific X11 protein) (Neuronal
Munc18-1-interacting protein 1) (Mint-1) (Adapter protein
X11alpha)
Length = 839
Score = 306 bits (784), Expect = 5e-83
Identities = 165/302 (54%), Positives = 210/302 (69%), Gaps = 21/302 (6%)
Frame = +1
Query: 103 PDYPTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVK-----------APD 249
P P LI+G++F ANYLGSTQL SD PSK+ RM+QAQEAV R+K AP+
Sbjct: 451 PCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKTAQKLAKSRKKAPE 510
Query: 250 SESQPSVAVDLFISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARR------- 408
ESQP VDLFIS+++I +LN + E MMDH L+TISYIADIGNI+VLMARR
Sbjct: 511 GESQPMTEVDLFISTQRIKVLNADTQEPMMDHPLRTISYIADIGNIVVLMARRRMPRSNS 570
Query: 409 ---ISHSHQSNSENREINNQCLNKIICHVFESDEAQLIAQSIGNAFQIAYIEFLKANGID 579
+ SH S R+ K+ICHVFES++AQLIAQSIG AF +AY EFL+ANGI+
Sbjct: 571 QENVEASHPSQDAKRQY------KMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN 624
Query: 580 DPKIFKEVDYQDVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGSMLP 759
P+ + +Y D+LN Q++ D+L F+ + K+V I KQ+GE LGVVIVESGWGS+LP
Sbjct: 625 -PEDLSQKEYSDLLNTQDMYNDDLIHFSKSENCKDVFIEKQKGEILGVVIVESGWGSILP 683
Query: 760 TVVLANMNPNGPAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVTVVN 939
TV++ANM GPA + G LNIG+Q+++ING SLVGLPL CQ +IK K Q+ VK+ +V
Sbjct: 684 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVR 743
Query: 940 CP 945
CP
Sbjct: 744 CP 745
>sp|Q02410|APBA1_HUMAN Amyloid beta A4 precursor protein-binding family A member 1
(Neuron-specific X11 protein) (Neuronal
Munc18-1-interacting protein 1) (Mint-1) (Adapter protein
X11alpha)
Length = 837
Score = 303 bits (775), Expect = 6e-82
Identities = 163/302 (53%), Positives = 209/302 (69%), Gaps = 21/302 (6%)
Frame = +1
Query: 103 PDYPTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVK-----------APD 249
P P LI+G++F ANYLGSTQL SD PSK+ RM+QAQEAV R+K AP+
Sbjct: 449 PCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPE 508
Query: 250 SESQPSVAVDLFISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARR------- 408
ESQP VDLFI +++I +LN + E MMDH L+TISYIADIGNI+VLMARR
Sbjct: 509 GESQPMTEVDLFILTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRIPRSNS 568
Query: 409 ---ISHSHQSNSENREINNQCLNKIICHVFESDEAQLIAQSIGNAFQIAYIEFLKANGID 579
+ SH S R+ K+ICHVFES++AQLIAQSIG AF +AY EFL+ANGI+
Sbjct: 569 QENVEASHPSQDGKRQY------KMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN 622
Query: 580 DPKIFKEVDYQDVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGSMLP 759
P+ + +Y D+LN Q++ D+L F+ + K+V I KQ+GE LGVVIVESGWGS+LP
Sbjct: 623 -PEDLSQKEYSDLLNTQDMYNDDLIHFSKSENCKDVFIEKQKGEILGVVIVESGWGSILP 681
Query: 760 TVVLANMNPNGPAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVTVVN 939
TV++ANM GPA + G LNIG+Q+++ING SLVGLPL CQ +IK + Q+ VK+ +V
Sbjct: 682 TVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLENQSRVKLNIVR 741
Query: 940 CP 945
CP
Sbjct: 742 CP 743
>sp|Q99767|APBA2_HUMAN Amyloid beta A4 precursor protein-binding family A member 2
(Neuron-specific X11L protein) (Neuronal
Munc18-1-interacting protein 2) (Mint-2) (Adapter protein
X11beta)
Length = 749
Score = 292 bits (748), Expect = 8e-79
Identities = 159/305 (52%), Positives = 207/305 (67%), Gaps = 24/305 (7%)
Frame = +1
Query: 103 PDYPTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKA------------P 246
P P LI+G++F ANYLGSTQL S+ PSK+ RM+QAQEAV RVK
Sbjct: 360 PCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 419
Query: 247 DSESQPSVAVDLFISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQ 426
+ ++Q VDLFIS+++I +LN + E MMDH L+TISYIADIGNI+VLMARR
Sbjct: 420 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARR------ 473
Query: 427 SNSENREINNQCLN------------KIICHVFESDEAQLIAQSIGNAFQIAYIEFLKAN 570
R + C+ K+ICHVFES++AQLIAQSIG AF +AY EFL+AN
Sbjct: 474 --RMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRAN 531
Query: 571 GIDDPKIFKEVDYQDVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGS 750
GI+ P+ + +Y D++N QE+ D+L F+N + KE+ + K +GE LGVV+VESGWGS
Sbjct: 532 GIN-PEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGS 590
Query: 751 MLPTVVLANMNPNGPAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVT 930
+LPTV+LANM GPAAR G L+IG+Q+++ING SLVGLPL CQ +IK K QT VK+
Sbjct: 591 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 650
Query: 931 VVNCP 945
+V+CP
Sbjct: 651 IVSCP 655
>sp|Q5RD33|APBA2_PONPY Amyloid beta A4 precursor protein-binding family A member 2
Length = 749
Score = 292 bits (748), Expect = 8e-79
Identities = 159/305 (52%), Positives = 207/305 (67%), Gaps = 24/305 (7%)
Frame = +1
Query: 103 PDYPTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKA------------P 246
P P LI+G++F ANYLGSTQL S+ PSK+ RM+QAQEAV RVK
Sbjct: 360 PCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 419
Query: 247 DSESQPSVAVDLFISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQ 426
+ ++Q VDLFIS+++I +LN + E MMDH L+TISYIADIGNI+VLMARR
Sbjct: 420 EGDAQTLTEVDLFISAQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARR------ 473
Query: 427 SNSENREINNQCLN------------KIICHVFESDEAQLIAQSIGNAFQIAYIEFLKAN 570
R + C+ K+ICHVFES++AQLIAQSIG AF +AY EFL+AN
Sbjct: 474 --RMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRAN 531
Query: 571 GIDDPKIFKEVDYQDVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGS 750
GI+ P+ + +Y D++N QE+ D+L F+N + KE+ + K +GE LGVV+VESGWGS
Sbjct: 532 GIN-PEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGS 590
Query: 751 MLPTVVLANMNPNGPAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVT 930
+LPTV+LANM GPAAR G L+IG+Q+++ING SLVGLPL CQ +IK K QT VK+
Sbjct: 591 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 650
Query: 931 VVNCP 945
+V+CP
Sbjct: 651 IVSCP 655
>sp|O35431|APBA2_RAT Amyloid beta A4 precursor protein-binding family A member 2
(Neuron-specific X11L protein) (Neuronal
Munc18-1-interacting protein 2) (Mint-2) (Adapter protein
X11beta)
Length = 750
Score = 292 bits (748), Expect = 8e-79
Identities = 159/305 (52%), Positives = 207/305 (67%), Gaps = 24/305 (7%)
Frame = +1
Query: 103 PDYPTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKA------------P 246
P P LI+G++F ANYLGSTQL S+ PSK+ RM+QAQEAV RVK
Sbjct: 361 PCEPEDLIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANS 420
Query: 247 DSESQPSVAVDLFISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQ 426
+ ++Q VDLFIS+++I +LN + E MMDH L+TISYIADIGNI+VLMARR
Sbjct: 421 EGDAQTLTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARR------ 474
Query: 427 SNSENREINNQCLN------------KIICHVFESDEAQLIAQSIGNAFQIAYIEFLKAN 570
R + C+ K+ICHVFES++AQLIAQSIG AF +AY EFL+AN
Sbjct: 475 --RMPRSASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRAN 532
Query: 571 GIDDPKIFKEVDYQDVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGS 750
GI+ P+ + +Y D++N QE+ D+L F+N + KE+ + K +GE LGVV+VESGWGS
Sbjct: 533 GIN-PEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGS 591
Query: 751 MLPTVVLANMNPNGPAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVT 930
+LPTV+LANM GPAAR G L+IG+Q+++ING SLVGLPL CQ +IK K QT VK+
Sbjct: 592 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLN 651
Query: 931 VVNCP 945
+V+CP
Sbjct: 652 IVSCP 656
>sp|P98084|APBA2_MOUSE Amyloid beta A4 precursor protein-binding family A member 2
(Neuron-specific X11L protein) (Neuronal
Munc18-1-interacting protein 2) (Mint-2) (Adapter protein
X11beta)
Length = 750
Score = 290 bits (741), Expect = 5e-78
Identities = 157/299 (52%), Positives = 205/299 (68%), Gaps = 24/299 (8%)
Frame = +1
Query: 121 LIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKA------------PDSESQP 264
LI+G++F ANYLGSTQL S+ PSK+ RM+QAQEAV RVK + ++Q
Sbjct: 367 LIDGIIFAANYLGSTQLLSERNPSKNIRMMQAQEAVSRVKRMQKAAKIKKKANSEGDAQT 426
Query: 265 SVAVDLFISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQSNSENR 444
VDLFIS+++I +LN + E MMDH L+TISYIADIGNI+VLMARR R
Sbjct: 427 LTEVDLFISTQRIKVLNADTQETMMDHALRTISYIADIGNIVVLMARR--------RMPR 478
Query: 445 EINNQCLN------------KIICHVFESDEAQLIAQSIGNAFQIAYIEFLKANGIDDPK 588
+ C+ K+ICHVFES++AQLIAQSIG AF +AY EFL+ANGI+ P+
Sbjct: 479 SASQDCIETTPGAQEGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN-PE 537
Query: 589 IFKEVDYQDVLNDQEISGDELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGSMLPTVV 768
+ +Y D++N QE+ D+L F+N + KE+ + K +GE LGVV+VESGWGS+LPTV+
Sbjct: 538 DLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGSILPTVI 597
Query: 769 LANMNPNGPAARCGSLNIGNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVTVVNCP 945
LANM GPAAR G L+IG+Q+++ING SLVGLPL CQ +IK K QT VK+ +V+CP
Sbjct: 598 LANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCP 656
>sp|O70248|APBA3_RAT Amyloid beta A4 precursor protein-binding family A member 3
(Neuron-specific X11L2 protein) (Neuronal
Munc18-1-interacting protein 3) (Mint-3) (Adapter protein
X11gamma)
Length = 569
Score = 258 bits (659), Expect = 2e-68
Identities = 136/275 (49%), Positives = 191/275 (69%)
Frame = +1
Query: 121 LIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKAPDSESQPSVAVDLFISSEK 300
L++G+LF A YLGSTQL S+ P TRM QAQEA+ RVKAP+ ESQP VD+FIS+++
Sbjct: 210 LMDGVLFGAKYLGSTQLLSERNPPPSTRMGQAQEAMDRVKAPEGESQPMTEVDIFISTKR 269
Query: 301 ILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQSNSENREINNQCLNKIIC 480
+ +L + + +MDH L+TISYIADIG +LVLMARR + ++ S++R+ + L K++C
Sbjct: 270 VKVLAADSQDALMDHALQTISYIADIGPVLVLMARR-RLAKRTTSQDRQ---RQLYKMLC 325
Query: 481 HVFESDEAQLIAQSIGNAFQIAYIEFLKANGIDDPKIFKEVDYQDVLNDQEISGDELRMF 660
HVF S++AQLIAQ+IG AF IAY +FL+ NGID +V Q + +L F
Sbjct: 326 HVFHSEDAQLIAQAIGQAFSIAYSQFLQENGIDP----SQVGMQPSASASHPHNGDLDHF 381
Query: 661 ANKDQHKEVIIPKQRGESLGVVIVESGWGSMLPTVVLANMNPNGPAARCGSLNIGNQLIA 840
N +EV I K+ GE LGV +VESGWGS+LPT V+AN+ GPA RCG+L+IG+++ A
Sbjct: 382 CNSQNCREVCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSIGDRVTA 441
Query: 841 INGHSLVGLPLLECQQLIKRCKIQTAVKVTVVNCP 945
ING SLVGL L CQ ++ + ++V +++++CP
Sbjct: 442 INGTSLVGLSLAACQAAVREVRRHSSVTLSIIHCP 476
>sp|O96018|APBA3_HUMAN Amyloid beta A4 precursor protein-binding family A member 3
(Neuron-specific X11L2 protein) (Neuronal
Munc18-1-interacting protein 3) (Mint-3) (Adapter protein
X11gamma)
Length = 575
Score = 257 bits (657), Expect = 3e-68
Identities = 136/275 (49%), Positives = 186/275 (67%)
Frame = +1
Query: 121 LIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKAPDSESQPSVAVDLFISSEK 300
L++G++F A YLGSTQL S+ P TRM QA+EA+ RVKAPD E+QP VDLF+S+++
Sbjct: 215 LLDGVIFGARYLGSTQLVSERNPPTSTRMAQAREAMDRVKAPDGETQPMTEVDLFVSTKR 274
Query: 301 ILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQSNSENREINNQCLNKIIC 480
I +L + E MMDH L TISY ADIG +LVLMARR + ++ + L K++C
Sbjct: 275 IKVLTADSQEAMMDHALHTISYTADIGCVLVLMARRRLARRPAPQDH----GRRLYKMLC 330
Query: 481 HVFESDEAQLIAQSIGNAFQIAYIEFLKANGIDDPKIFKEVDYQDVLNDQEISGDELRMF 660
HVF +++AQLIAQ+IG AF AY +FL+ +GID +V + +L F
Sbjct: 331 HVFYAEDAQLIAQAIGQAFAAAYSQFLRESGIDP----SQVGVHPSPGACHLHNGDLDHF 386
Query: 661 ANKDQHKEVIIPKQRGESLGVVIVESGWGSMLPTVVLANMNPNGPAARCGSLNIGNQLIA 840
+N D +EV + K+RGE LGV +VESGWGS+LPT V+AN+ GPA R G+L+IG++L A
Sbjct: 387 SNSDNCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTA 446
Query: 841 INGHSLVGLPLLECQQLIKRCKIQTAVKVTVVNCP 945
ING SLVGLPL CQ ++ K QT+V +++V+CP
Sbjct: 447 INGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 481
>sp|O88888|APBA3_MOUSE Amyloid beta A4 precursor protein-binding family A member 3
(Neuron-specific X11L2 protein) (Neuronal
Munc18-1-interacting protein 3) (Mint-3) (Adapter protein
X11gamma)
Length = 571
Score = 253 bits (647), Expect = 4e-67
Identities = 135/281 (48%), Positives = 192/281 (68%)
Frame = +1
Query: 103 PDYPTTLIEGLLFRANYLGSTQLTSDNRPSKDTRMIQAQEAVGRVKAPDSESQPSVAVDL 282
P P L++G++F A YLGSTQL S+ P+ TRM QAQEA+ RVKAP+ E+QP V VD+
Sbjct: 206 PCGPEELMDGVIFGAKYLGSTQLLSERSPAPSTRMGQAQEAMDRVKAPEGETQPMVEVDI 265
Query: 283 FISSEKILILNTNLSEIMMDHNLKTISYIADIGNILVLMARRISHSHQSNSENREINNQC 462
FIS++++ +L + + +MDH L+TISYIADIG +LVLMARR + ++ ++R+ +
Sbjct: 266 FISTKRVKVLAADSQDALMDHALQTISYIADIGPVLVLMARR-RLARRTTPQDRQ---RR 321
Query: 463 LNKIICHVFESDEAQLIAQSIGNAFQIAYIEFLKANGIDDPKIFKEVDYQDVLNDQEISG 642
L K++CHVF S++AQLIAQ+IG AF IAY +FL+ N ID +V Q
Sbjct: 322 LYKMLCHVFHSEDAQLIAQAIGQAFSIAYSQFLQENRIDP----SQVGTQPSTAASHPHN 377
Query: 643 DELRMFANKDQHKEVIIPKQRGESLGVVIVESGWGSMLPTVVLANMNPNGPAARCGSLNI 822
+L F N +EV I K+ GE LGV +VESGWGS+LPT V+AN+ GPA RCG+L+I
Sbjct: 378 GDLDHFCNSQNCREVCIQKRPGEGLGVALVESGWGSLLPTAVIANLLHGGPAERCGALSI 437
Query: 823 GNQLIAINGHSLVGLPLLECQQLIKRCKIQTAVKVTVVNCP 945
G+++ AING SLVGL L CQ ++ + ++V +++++CP
Sbjct: 438 GDRVTAINGTSLVGLSLAACQAAVREVRRLSSVTLSIIHCP 478
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,294,793
Number of Sequences: 369166
Number of extensions: 1968868
Number of successful extensions: 5045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5018
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9798962520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)