Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G09
(897 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49193|RALB_TODPA Retinal-binding protein (RALBP) 34 0.63
sp|P45289|SAPF_HAEIN Peptide transport system ATP-binding p... 34 0.63
sp|Q924Z4|LASS2_MOUSE LAG1 longevity assurance homolog 2 (T... 30 9.1
>sp|P49193|RALB_TODPA Retinal-binding protein (RALBP)
Length = 343
Score = 33.9 bits (76), Expect = 0.63
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 325 NSDDVKTYEIPTISRGKPTVNQGAGDKVYVEGARNFRVEDHNKYLKNQQKLSD 483
N+DD +T E T+ G+GDK+YVE + +E+ N Y+K + K +
Sbjct: 212 NTDDFETME---------TITVGSGDKIYVE----YEIENENTYIKWEYKTEE 251
>sp|P45289|SAPF_HAEIN Peptide transport system ATP-binding protein sapF
Length = 269
Score = 33.9 bits (76), Expect = 0.63
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +1
Query: 685 YISLQQPYSIFNYVAFIVILISLWDRVDAGQPSSSYTPPQIGCLLALVLTFIAFIIQNAL 864
YI + Q + ++A +I++ ++ G P + +T PQ LV ++ I+
Sbjct: 202 YIYVGQDLGVIKHIADTIIVMDEGKMIEYGSPQNLFTDPQTDVTRRLVESYFGKILDETA 261
Query: 865 YLFDKN 882
++ DKN
Sbjct: 262 WVKDKN 267
>sp|Q924Z4|LASS2_MOUSE LAG1 longevity assurance homolog 2 (Translocating chain-associating
membrane protein homolog 3) (TRAM homolog 3)
Length = 380
Score = 30.0 bits (66), Expect = 9.1
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Frame = +3
Query: 624 SILPCY*WYY-----------FNHSTNISH--FIYFITTTVFYIQLCCFHCYFNIIMGSC 764
SI+P WYY F+ ++++ F I V I L CF + N +
Sbjct: 174 SIIPSQYWYYMIELSFYWSLLFSIASDVKRKDFKEQIIHHVATIILLCFSWFANYVRAG- 232
Query: 765 *CWTTIFKLHSTSDWMLTGSSTHFYSFYNSKCS 863
T I LH SD++L + Y+ + + C+
Sbjct: 233 ---TLIMALHDASDYLLESAKMFNYAGWKNTCN 262
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,853,648
Number of Sequences: 369166
Number of extensions: 1514191
Number of successful extensions: 4518
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4510
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)