Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F19-2
(372 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13811|PDI2_SCHPO Putative protein disulfide-isomerase C... 30 1.3
sp|P40164|YNU1_YEAST Hypothetical 98.1 kDa protein in SPX19... 28 6.6
sp|Q81999|VE1_HPV72 Replication protein E1 28 6.6
sp|Q8N7E2|ZN645_HUMAN Zinc finger protein 645 28 6.6
sp|Q96DT7|ZBT10_HUMAN Zinc finger and BTB domain containing... 28 6.6
sp|Q9WTY8|ZBT10_RAT Zinc finger and BTB domain containing p... 28 6.6
sp|P54662|DEGU_BREBE Transcriptional regulatory protein degU 28 6.6
sp|Q9T0E0|PMAX_ARATH Putative ATPase, plasma membrane-like 28 8.6
sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCC... 28 8.6
sp|Q8PI37|GCST_XANAC Aminomethyltransferase (Glycine cleava... 28 8.6
>sp|O13811|PDI2_SCHPO Putative protein disulfide-isomerase C17H9.14c precursor
Length = 359
Score = 30.4 bits (67), Expect = 1.3
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +3
Query: 21 YCNKLFPKKEHMCKKFLKNELPNI-LNKLRVSIHRDYLCNSTCNGKLSKDWIVSF-TEHF 194
YC +L P E + K F KNE PN+ + K+ + D G+L + + SF T F
Sbjct: 172 YCKRLAPTYETLGKVF-KNE-PNVEIVKINADVFADI-------GRLHE--VASFPTIKF 220
Query: 195 FTNEDKKCPACKYVSKILKSLIRSSGFKAAVIRSFQQTQCKT 320
F +DK P + L+SLI K+ RS T T
Sbjct: 221 FPKDDKDKPELYEGDRSLESLIEYINKKSGTQRSPDGTLLST 262
>sp|P40164|YNU1_YEAST Hypothetical 98.1 kDa protein in SPX19-GCR2 intergenic region
Length = 858
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 123 DYLCNSTCNGKLSKDWIVSFTEHFFTNEDKKCPACKY-VSKILKSLI 260
D+L N T L ++I + HF E++K P + +S I+K+LI
Sbjct: 181 DFLKNETIEFILQSNYIDTLISHFHKAEEEKIPKDLFLLSNIIKTLI 227
>sp|Q81999|VE1_HPV72 Replication protein E1
Length = 650
Score = 28.1 bits (61), Expect = 6.6
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 322 NVLHWVC*KLLITAALNPLDRINDFKIFETYLHAGHFLSSFVKKCSVK 179
N+ C L+IT +NPL+ FK YLH+ L F+ KC +K
Sbjct: 552 NLTQLKCPPLMITTNINPLED-QAFK----YLHSRIVLFKFMHKCPLK 594
>sp|Q8N7E2|ZN645_HUMAN Zinc finger protein 645
Length = 425
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 210 KKCPACKYVSKILKSLIRSSGFKAAVIRSFQQTQCKTLFLATKRVCKFHISR 365
K CP C+Y +++ R S F ++++ QCK +L+ K + + HI R
Sbjct: 91 KVCPRCRYPVLRIEAHKRGSVFMCSIVQ-----QCKRTYLSQKSL-QAHIKR 136
>sp|Q96DT7|ZBT10_HUMAN Zinc finger and BTB domain containing protein 10 (Zinc finger
protein RIN ZF)
Length = 847
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 213 KCPACKYVSKILKSLIRSSGFKAAVIRSFQQTQCKTLFLATKRV 344
KCP C YV+K ++L R V RSF C LF + V
Sbjct: 699 KCPHCSYVAKYRRTLKRHLLIHTGV-RSFSCDICGKLFTRREHV 741
>sp|Q9WTY8|ZBT10_RAT Zinc finger and BTB domain containing protein 10 (Zinc finger
protein RIN ZF)
Length = 836
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 213 KCPACKYVSKILKSLIRSSGFKAAVIRSFQQTQCKTLFLATKRV 344
KCP C YV+K ++L R + V RSF+ C +F + V
Sbjct: 690 KCPHCSYVAKYRRTLKRHLLIHSGV-RSFKCEICGKMFTRREHV 732
>sp|P54662|DEGU_BREBE Transcriptional regulatory protein degU
Length = 236
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 21 YCNKLFPKKEHMCKKFLKNELPNILNKLRVSIHRDYLCNSTCNG 152
Y N++ + ++ +K +KN + NIL K+ V+ + S NG
Sbjct: 188 YSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKNG 231
>sp|Q9T0E0|PMAX_ARATH Putative ATPase, plasma membrane-like
Length = 813
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +3
Query: 216 CPACKYVSKILKSLIRS---SGFKAAVIRSFQQTQCKTLFLATKRVC---KFHI 359
C A + K + S IR+ G K+ I F+ T C T+F ++C K+HI
Sbjct: 432 CNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHI 485
>sp|Q9VVN6|CP312_DROME Probable cytochrome P450 312a1 (CYPCCCXIIA1)
Length = 510
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 289 ITAALNPLDRINDFKIFETYLHAGHFLSSFVK 194
+ +A L + ND+++FE +L G F S F K
Sbjct: 95 LCSAQQLLQKTNDYRVFENWLCEGLFTSGFEK 126
>sp|Q8PI37|GCST_XANAC Aminomethyltransferase (Glycine cleavage system T protein)
Length = 369
Score = 27.7 bits (60), Expect = 8.6
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 60 KKFLKNELPNILNKLRVSIHRDYLCNSTCNGKLSKDWIVSF-TEHFF 197
++FL+ L N ++KL+VS Y C G + D IV + TE FF
Sbjct: 63 REFLRYLLANSVDKLKVSGKALYTCMLNPQGGVIDDLIVYYMTEDFF 109
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,056,053
Number of Sequences: 369166
Number of extensions: 771388
Number of successful extensions: 2580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2580
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)