Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F19-1
(373 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 64 1e-10
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 55 5e-08
sp|P30938|SSR5_RAT Somatostatin receptor type 5 (SS5R) 32 0.35
sp|O08858|SSR5_MOUSE Somatostatin receptor type 5 (SS5R) 32 0.35
sp|Q89AE0|AROQ_BUCBP 3-dehydroquinate dehydratase (3-dehydr... 30 1.3
sp|Q9PK95|HEM3_CHLMU Probable porphobilinogen deaminase (PB... 29 2.9
sp|P33455|VGLM_SEOU8 M polyprotein precursor [Contains: Gly... 29 3.9
sp|Q92AB7|RECU_LISIN Recombination protein U homolog 29 3.9
sp|Q71YC4|RECU_LISMF Recombination protein U homolog >gi|22... 28 5.0
sp|O84301|HEM3_CHLTR Probable porphobilinogen deaminase (PB... 28 6.6
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 63.9 bits (154), Expect = 1e-10
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = -3
Query: 365 GLCGCFDDCGTCLL-TYFVPCYLIGKDADAVGSNCFLCGLAALFAGPCIIAYVRSKVRER 189
G+C CF DCG CL T+ PC +G A + C LCG + +R+ R R
Sbjct: 29 GMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTSVA---------MRTLYRTR 77
Query: 188 RNISGNICEDFICAICCNCCTVAQMHQEV 102
I G+IC+D++ +CC CT+ Q+ +++
Sbjct: 78 YGIPGSICDDYMATLCCPHCTLCQIKRDI 106
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 55.1 bits (131), Expect = 5e-08
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = -3
Query: 362 LCGCFDDCGTCLLTYFVPCYL-IGKDADAVGSNCFLCGLAALFAGPCIIAYVRSKVRERR 186
LC CF DCG CL F C+ +G A + C LCG +R+ R R
Sbjct: 27 LCDCFSDCGVCLCGTF--CFTCLGCQVAADMNECCLCGTTVA---------MRTLYRTRY 75
Query: 185 NISGNICEDFICAICCNCCTVAQMHQEV 102
I G+IC+D++ + C C+V Q+ +++
Sbjct: 76 GIPGSICDDYMVTLFCPVCSVCQLKRDI 103
>sp|P30938|SSR5_RAT Somatostatin receptor type 5 (SS5R)
Length = 363
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = -2
Query: 363 SLWVF**LWNMFINVFCTVLFNWKRCRRSW*QLFSLWFSGVICWT---------LYYCIC 211
++WVF L ++ + VF V W C SW + LW + I +T L C+C
Sbjct: 160 AVWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLC 219
>sp|O08858|SSR5_MOUSE Somatostatin receptor type 5 (SS5R)
Length = 362
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Frame = -2
Query: 363 SLWVF**LWNMFINVFCTVLFNWKRCRRSW*QLFSLWFSGVICWT---------LYYCIC 211
++WVF L ++ + VF V W C SW + LW + I +T L C+C
Sbjct: 159 AVWVFSLLMSLPLLVFADVQEGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLC 218
>sp|Q89AE0|AROQ_BUCBP 3-dehydroquinate dehydratase (3-dehydroquinase) (Type II DHQase)
Length = 154
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 230 VQQITPLNHKENNCYQLRLHLFQLNSTVQNTLINMFHNHQN 352
+ Q+T KE + + LH Q NS ++TLIN HN +N
Sbjct: 31 LSQLTHALTKEATTFNIHLHHIQSNS--ESTLINKIHNSKN 69
>sp|Q9PK95|HEM3_CHLMU Probable porphobilinogen deaminase (PBG) (Hydroxymethylbilane
synthase) (HMBS) (Pre-uroporphyrinogen synthase)
Length = 242
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -1
Query: 211 FDRKFVSDVILVEIFVRISFVQFAVTVVLLHKCIKRLYRWEDRAW 77
++ F+SD L +I +R++ + + V+ H+C++RL + R W
Sbjct: 6 YNDPFLSDFCLGKIPLRLASRKSPLAVLQAHECLRRLQTFFPRLW 50
>sp|P33455|VGLM_SEOU8 M polyprotein precursor [Contains: Glycoprotein G1; Glycoprotein
G2]
Length = 1133
Score = 28.9 bits (63), Expect = 3.9
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -3
Query: 290 DADAVGSNCFLCGLAALFAGPCIIAYVRSKVRERRNISGNICEDFIC-AICCNCCTVAQM 114
D VG+ C CGL P A+ VR R + E+++C I N C V +
Sbjct: 767 DCPGVGTGCTACGLYLDQLKPVGTAFKIISVRYSRKVCVQFGEEYLCKTIDMNDCFVTR- 825
Query: 113 HQEVISMG 90
H ++ +G
Sbjct: 826 HAKICIIG 833
>sp|Q92AB7|RECU_LISIN Recombination protein U homolog
Length = 201
Score = 28.9 bits (63), Expect = 3.9
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 21/84 (25%)
Frame = +2
Query: 182 YYVAHELSIEHMQ*YRVQQI------------------TPLNHKENNCYQLRLHLFQLNS 307
YY+AH++++ H + VQ + TP N Y+ + F+
Sbjct: 46 YYLAHDIAVIHKKPTPVQIVSVDYPKRSSAKIKEAYFKTPSTTDYNGVYKGKYVDFEAKE 105
Query: 308 TVQNTL---INMFHNHQNTHKDHV 370
T QNT ++ FH+HQ TH +V
Sbjct: 106 T-QNTTSFPLSNFHDHQMTHMANV 128
>sp|Q71YC4|RECU_LISMF Recombination protein U homolog
sp|Q8Y611|RECU_LISMO Recombination protein U homolog
Length = 201
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 21/84 (25%)
Frame = +2
Query: 182 YYVAHELSIEHMQ*YRVQQI------------------TPLNHKENNCYQLRLHLFQLNS 307
YY+ HE+++ H + VQ + TP N Y+ + F+
Sbjct: 46 YYLTHEIAVIHKKPTPVQIVSVDYPKRSSAKIKEAYFKTPSTTDYNGVYKGKYVDFEAKE 105
Query: 308 TVQNTL---INMFHNHQNTHKDHV 370
T QNT ++ FH+HQ TH +V
Sbjct: 106 T-QNTTSFPLSNFHDHQMTHMANV 128
>sp|O84301|HEM3_CHLTR Probable porphobilinogen deaminase (PBG) (Hydroxymethylbilane
synthase) (HMBS) (Pre-uroporphyrinogen synthase)
Length = 241
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -1
Query: 211 FDRKFVSDVILVEIFVRISFVQFAVTVVLLHKCIKRLYRWEDRAW 77
++ F++D L I +R++ Q ++ V+ H+C+++L + R W
Sbjct: 6 YNDPFLADFCLGNIPLRLASRQSSLAVLQAHECLRKLQIFFPRLW 50
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,237,421
Number of Sequences: 369166
Number of extensions: 840741
Number of successful extensions: 2224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2219
length of database: 68,354,980
effective HSP length: 90
effective length of database: 51,728,830
effective search space used: 1707051390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)