Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F13
(876 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 112 2e-24
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 109 1e-23
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 89 2e-17
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 86 2e-16
sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen relat... 82 2e-15
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 77 5e-14
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 77 5e-14
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 76 1e-13
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 75 2e-13
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 74 4e-13
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 112 bits (279), Expect = 2e-24
Identities = 66/159 (41%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Frame = +1
Query: 1 ELNESALNHHNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSV--SNGQYGENL 174
+ N L HN+ RA H P L + L + AQ Y+E LA T+ HS S GQ GENL
Sbjct: 8 QFNNEVLKAHNEYRAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENL 67
Query: 175 A-SSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRA 351
A +SY+ TG WY EIK Y F ++ S GHF+ +VWK+TK G G+A
Sbjct: 68 AWASYDQ------TGKDVADRWYSEIKSYNF-QQPGFTSGTGHFTAMVWKNTKKIGVGKA 120
Query: 352 QSDNGNFVIVGQYKPAGNVI--GHFKENVLSPTGPPPKR 462
+ +G+ +V +Y PAGN++ G F+ENV PPPK+
Sbjct: 121 SASDGSSFVVARYFPAGNIVNQGFFEENV-----PPPKK 154
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 109 bits (272), Expect = 1e-23
Identities = 63/152 (41%), Positives = 87/152 (57%), Gaps = 5/152 (3%)
Frame = +1
Query: 1 ELNESALNHHNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSV--SNGQYGENL 174
+ + L HN+ R H P L + +L + AQ Y+E LA T+ HS S GQ GENL
Sbjct: 8 QFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENL 67
Query: 175 A-SSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRA 351
A +SY+ TG WY EIK+Y F ++ S GHF+ +VWK+TK G G+A
Sbjct: 68 AWASYDQ------TGKEVADRWYSEIKNYNF-QQPGFTSGTGHFTAMVWKNTKKMGVGKA 120
Query: 352 QSDNGNFVIVGQYKPAGNVI--GHFKENVLSP 441
+ +G+ +V +Y PAGNV+ G F+ENVL P
Sbjct: 121 SASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 89.0 bits (219), Expect = 2e-17
Identities = 60/143 (41%), Positives = 74/143 (51%), Gaps = 3/143 (2%)
Frame = +1
Query: 13 SALNHHNKLRALHH-SPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYN 189
S L HNK RALH +P L+ LA AQ YA+ + T +HS G YGENLA Y+
Sbjct: 165 SVLAEHNKKRALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHS--GGPYGENLALGYD 222
Query: 190 SREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDN-- 363
G AA WY+EI +Y F +S GHF+QVVWK T G G
Sbjct: 223 --------GPAAVDAWYNEISNYDFSNPG-FSSNTGHFTQVVWKSTTQVGCGIKTCGGAW 273
Query: 364 GNFVIVGQYKPAGNVIGHFKENV 432
G++VI Y PAGN G + +NV
Sbjct: 274 GDYVIC-SYDPAGNYEGEYADNV 295
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 85.5 bits (210), Expect = 2e-16
Identities = 63/171 (36%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Frame = +1
Query: 19 LNHHNKLRALH-HSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSR 195
LN HNK RALH + LT LA AQ YA++ + +HS +G YGENLA Y
Sbjct: 30 LNEHNKFRALHVDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLALGY--- 84
Query: 196 EGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFG-RAQSDNGNF 372
T A WY EI Y + + GHF+QVVWK T G G + N
Sbjct: 85 -----TDTGAVDAWYGEISKYNYSNPG-FSESTGHFTQVVWKSTAEIGCGYKYCGTTWNN 138
Query: 373 VIVGQYKPAGNVIGHFKENVLSPTGPPPKREEPRIDANQNKVGTSKSSSKT 525
IV Y P GN +G F E V EP I + +S S+S T
Sbjct: 139 YIVCSYNPPGNYLGEFAEEV-----------EPLISTVSSSSSSSSSTSTT 178
>sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen related in Sc 2)
Length = 329
Score = 82.0 bits (201), Expect = 2e-15
Identities = 57/148 (38%), Positives = 73/148 (49%), Gaps = 3/148 (2%)
Frame = +1
Query: 1 ELNESALNHHNKLRALHHSP-KLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLA 177
+ + S +N HN RALH LT LA AQ YA+ + HS G YGENLA
Sbjct: 191 DFSTSMVNEHNTKRALHKDTGSLTWSDTLATYAQNYADSYDCSGNLVHS--GGPYGENLA 248
Query: 178 SSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQS 357
Y + TG + WY+EI Y + + GHF+QVVWK T G G
Sbjct: 249 LGYGT------TG--SVDAWYNEITSYDYSNPG-FSESAGHFTQVVWKGTSEVGCGLKSC 299
Query: 358 DN--GNFVIVGQYKPAGNVIGHFKENVL 435
G+++I YK AGNVIG F +NV+
Sbjct: 300 GGEWGDYIICS-YKAAGNVIGEFADNVM 326
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 77.4 bits (189), Expect = 5e-14
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Frame = +1
Query: 19 LNHHNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSRE 198
L+ HN RA LT D +A AQ YA +LA HS +GQYGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----S 91
Query: 199 GYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFV 375
G T A + W +E + Y + ++ GH++QVVW+++ G R Q +NG ++
Sbjct: 92 GDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYI 151
Query: 376 IVGQYKPAGNVIG 414
+ Y P GNVIG
Sbjct: 152 VSCNYDPPGNVIG 164
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 77.4 bits (189), Expect = 5e-14
Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = +1
Query: 19 LNHHNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSRE 198
L+ HN RA LT D +A AQ Y +LA HS +GQYGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----S 91
Query: 199 GYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFV 375
G T A + W DE + Y + ++ GH++QVVW+++ G R + +NG +V
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYV 151
Query: 376 IVGQYKPAGNVIG 414
+ Y P GNVIG
Sbjct: 152 VSCNYDPPGNVIG 164
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 76.3 bits (186), Expect = 1e-13
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Frame = +1
Query: 19 LNHHNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSRE 198
L+ HN RA LT D +A AQ YA +LA HS +GQYGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----S 91
Query: 199 GYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFV 375
G T A + W DE + Y + ++ GH++QVVW+++ G R Q +NG +V
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYV 151
Query: 376 IVGQYKPAGNVIG 414
+ Y P GN G
Sbjct: 152 VSCNYDPPGNYRG 164
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 75.1 bits (183), Expect = 2e-13
Identities = 47/132 (35%), Positives = 64/132 (48%)
Frame = +1
Query: 19 LNHHNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSRE 198
LN HN R +T D LA AQ YA + HS +G YGENLA+++
Sbjct: 31 LNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHS--HGPYGENLAAAFPQ-- 86
Query: 199 GYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVI 378
A + W DE + Y + S + GH++QVVW+++ G R +S+NG F I
Sbjct: 87 ---LNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFI 143
Query: 379 VGQYKPAGNVIG 414
Y P GN IG
Sbjct: 144 TCNYDPPGNFIG 155
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 74.3 bits (181), Expect = 4e-13
Identities = 49/130 (37%), Positives = 65/130 (50%), Gaps = 1/130 (0%)
Frame = +1
Query: 28 HNKLRALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYV 207
HN RA ++ D +LA AQ YA A HS + GENLA G
Sbjct: 35 HNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA----GENLAKG-----GGD 85
Query: 208 FTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVG 384
FTG AA Q W E DY + + K+ GH++QVVW+++ G GRA+ +NG + I
Sbjct: 86 FTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISC 145
Query: 385 QYKPAGNVIG 414
Y P GN +G
Sbjct: 146 NYDPVGNWVG 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,892,123
Number of Sequences: 369166
Number of extensions: 1899410
Number of successful extensions: 6051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5967
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)