Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_F07
(863 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 496 e-140
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 496 e-140
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 496 e-140
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 496 e-140
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 495 e-140
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 495 e-140
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 494 e-139
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 494 e-139
sp|P52273|TBA_BOMMO Tubulin alpha chain 493 e-139
sp|P30436|TBA_ONCKE Tubulin alpha chain 493 e-139
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 496 bits (1277), Expect = e-140
Identities = 233/287 (81%), Positives = 263/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFL+FH LLMERLS+DYGKKSKLEFAIYP+P ++TAVV
Sbjct: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 496 bits (1276), Expect = e-140
Identities = 233/287 (81%), Positives = 263/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFL+FH LLMERLS+DYGKKSKLEFA+YP+P ++TAVV
Sbjct: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISS+KA HEQL+VSEITN CF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSEKAYHEQLTVSEITNTCFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 496 bits (1276), Expect = e-140
Identities = 234/287 (81%), Positives = 261/287 (90%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++ C GLQGFL+FH LLMERLS+DYGKKSKLEFAIYP+P +ATAVV
Sbjct: 123 RKLADNCAGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVATAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSVSEITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVSEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTA 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 496 bits (1276), Expect = e-140
Identities = 233/287 (81%), Positives = 262/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFL+FH LLMERLS+DYGKKSKLEFA+YP+P +ATAVV
Sbjct: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RP+YTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV++AIANIK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIANIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPG DLA+V R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGADLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 495 bits (1275), Expect = e-140
Identities = 233/287 (81%), Positives = 262/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKLS+QCTGLQGFL+FH LLMERLS+DYGKKSKLEFAIYP+P ++TAVV
Sbjct: 123 RKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HE LSV+EITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 495 bits (1274), Expect = e-140
Identities = 232/287 (80%), Positives = 262/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFL+FH LLMERLS+DYGKKSKLEFA+YP+P ++TAVV
Sbjct: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQL+VSEITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 494 bits (1273), Expect = e-139
Identities = 233/287 (81%), Positives = 262/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFLVFH LLMERLS+DYGKKSKLEF+IYP+P ++TAVV
Sbjct: 123 RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV+EITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 494 bits (1271), Expect = e-139
Identities = 233/287 (81%), Positives = 262/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFLVFH LLMERLS+DYGKKSKLEF+IYP+P ++TAVV
Sbjct: 123 RKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RPTYTNLNRL+ QIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSVSEITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV++AIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 493 bits (1270), Expect = e-139
Identities = 232/287 (80%), Positives = 262/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFL+FH LLMERLS+DYGKKSKLEFAIYP+P ++TAVV
Sbjct: 123 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVV 182
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+ PTYTNLNRL+GQIVSSITASL
Sbjct: 183 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASL 242
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS++KA HEQLSV+EITNACF+P NQM
Sbjct: 243 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 302
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACC+LYRGDVV KDV++AIA IK+K+ IQFVDWCPTGFKVG+NYQP T
Sbjct: 303 VKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 362
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 363 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 409
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 493 bits (1269), Expect = e-139
Identities = 231/287 (80%), Positives = 263/287 (91%)
Frame = +3
Query: 3 RKLSEQCTGLQGFLVFHXXXXXXXXXXXXLLMERLSIDYGKKSKLEFAIYPSPSMATAVV 182
RKL++QCTGLQGFL+FH LLMERLS+DYGKKSKLEFA+YP+P ++TAVV
Sbjct: 117 RKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVV 176
Query: 183 EPYNSILTTHTTLEHTDCAFLADNEAIYDICRRNLDIDRPTYTNLNRLVGQIVSSITASL 362
EPYNSILTTHTTLEH+DCAF+ DNEAIYDICRRNLDI+RP+YTNLNRL+GQIVSSITASL
Sbjct: 177 EPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASL 236
Query: 363 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISSQKANHEQLSVSEITNACFDPYNQM 542
RFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVIS++KA HEQLSV++ITNACF+P NQM
Sbjct: 237 RFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVADITNACFEPANQM 296
Query: 543 VKCNPKEGKYMACCLLYRGDVVSKDVSSAIANIKSKKNIQFVDWCPTGFKVGLNYQPSTQ 722
VKC+P+ GKYMACCLLYRGDVV KDV+SAIA IK+K++IQFVDWCPTGFKVG+NYQP T
Sbjct: 297 VKCDPRHGKYMACCLLYRGDVVPKDVNSAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTV 356
Query: 723 VPGGDLAQVKRSLCMLSNTTAIVEAWSRLNRKFDLMFAKRAFVHWYV 863
VPGGDLA+V+R++CMLSNTTAI EAW+RL+ KFDLM+AKRAFVHWYV
Sbjct: 357 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 403
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,494,328
Number of Sequences: 369166
Number of extensions: 1863142
Number of successful extensions: 4734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4452
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)