Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_E19
(892 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial... 299 6e-81
sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial... 297 2e-80
sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial p... 296 4e-80
sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial... 296 5e-80
sp|P12762|ALDH2_HORSE Aldehyde dehydrogenase, mitochondrial... 294 3e-79
sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial... 294 3e-79
sp|P24549|AL1A1_MOUSE Retinal dehydrogenase 1 (RalDH1) (RAL... 294 3e-79
sp|P51647|AL1A1_RAT Retinal dehydrogenase 1 (RalDH1) (RALDH... 291 2e-78
sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 (RalDH1) (RAL... 291 2e-78
sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RAL... 290 4e-78
>sp|P81178|ALDH2_MESAU Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDH1)
(ALDH-E2)
Length = 500
Score = 299 bits (766), Expect = 6e-81
Identities = 151/263 (57%), Positives = 189/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 65 PEIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGS 244
PE+ +IFINNEW ++ TFPT+NP+ +VI QV EG + GS
Sbjct: 15 PEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGSKEDVDKAVKAARAAFQLGS 74
Query: 245 EWRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAG 421
WR ++AS RG LLN+LADLIE + Y++ LE LDNGK YVI+ D++ +K LRYYAG
Sbjct: 75 PWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG 134
Query: 422 YADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPA 601
+ADK HG T DGDF SYTR EPVGV G IIPWN+P ++ +K+GPALA G +V+K A
Sbjct: 135 WADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 194
Query: 602 EQTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIM 781
EQTPL+AL++ +LI AGFP GVVNIVPG+GPTAGAA++SH DV K+ FTGSTE+GH+I
Sbjct: 195 EQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQ 254
Query: 782 KTIGETSLKRVTLELGGKSPLII 850
G ++LKRVTLELGGKSP II
Sbjct: 255 VAAGSSNLKRVTLELGGKSPNII 277
>sp|P05091|ALDH2_HUMAN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 517
Score = 297 bits (761), Expect = 2e-80
Identities = 152/263 (57%), Positives = 188/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 65 PEIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGS 244
PE+ +IFINNEW ++ TFPT+NP+ +VI QV EG + GS
Sbjct: 32 PEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGS 91
Query: 245 EWRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAG 421
WR ++AS RG LLN+LADLIE + Y++ LE LDNGK YVI+ D++ +K LRYYAG
Sbjct: 92 PWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG 151
Query: 422 YADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPA 601
+ADK HG T DGDF SYTR EPVGV G IIPWN+P ++ +K+GPALA G +V+K A
Sbjct: 152 WADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 211
Query: 602 EQTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIM 781
EQTPL+AL++ +LI AGFP GVVNIVPG+GPTAGAA++SH DV K+ FTGSTEIG VI
Sbjct: 212 EQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEIGRVIQ 271
Query: 782 KTIGETSLKRVTLELGGKSPLII 850
G ++LKRVTLELGGKSP II
Sbjct: 272 VAAGSSNLKRVTLELGGKSPNII 294
>sp|P11884|ALDH2_RAT Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDH1) (ALDH-E2)
Length = 519
Score = 296 bits (759), Expect = 4e-80
Identities = 150/263 (57%), Positives = 188/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 65 PEIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGS 244
PE+ +IFINNEW ++ TFPT+NP+ +VI QV EG + GS
Sbjct: 34 PEVFCNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAAQAAFQLGS 93
Query: 245 EWRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAG 421
WR ++AS RG LL +LADLIE + Y++ LE LDNGK YVI+ D++ +K LRYYAG
Sbjct: 94 PWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG 153
Query: 422 YADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPA 601
+ADK HG T DGDF SYTR EPVGV G IIPWN+P ++ +K+GPALA G +V+K A
Sbjct: 154 WADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 213
Query: 602 EQTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIM 781
EQTPL+AL++ +LI AGFP GVVNIVPG+GPTAGAA++SH DV K+ FTGSTE+GH+I
Sbjct: 214 EQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQ 273
Query: 782 KTIGETSLKRVTLELGGKSPLII 850
G ++LKRVTLELGGKSP II
Sbjct: 274 VAAGSSNLKRVTLELGGKSPNII 296
>sp|P20000|ALDH2_BOVIN Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(ALDHI) (ALDH-E2)
Length = 520
Score = 296 bits (758), Expect = 5e-80
Identities = 145/263 (55%), Positives = 189/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 65 PEIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGS 244
PE+ + +IFINNEW ++ TFPT+NP+ VI V EG + GS
Sbjct: 35 PEVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGS 94
Query: 245 EWRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAG 421
WR ++AS RG LLN+LADLIE + Y++ LE LDNGK Y+I+ D++ +K LRYYAG
Sbjct: 95 PWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAG 154
Query: 422 YADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPA 601
+ADK HG T DGD+ SYTR EPVGV G IIPWN+P ++ +K+GPALA G +V+K A
Sbjct: 155 WADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 214
Query: 602 EQTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIM 781
EQTPL+AL++ +LI AGFP GVVN++PG+GPTAGAA++SH DV K+ FTGSTE+GH+I
Sbjct: 215 EQTPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQ 274
Query: 782 KTIGETSLKRVTLELGGKSPLII 850
G+++LKRVTLE+GGKSP II
Sbjct: 275 VAAGKSNLKRVTLEIGGKSPNII 297
>sp|P12762|ALDH2_HORSE Aldehyde dehydrogenase, mitochondrial (ALDH class 2) (ALDHI)
(ALDH-E2)
Length = 500
Score = 294 bits (752), Expect = 3e-79
Identities = 147/263 (55%), Positives = 187/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 65 PEIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGS 244
PE+ + +IFINNEW ++ TFPT+NP+ +VI QV G + GS
Sbjct: 15 PEVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQLGS 74
Query: 245 EWRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAG 421
WR ++AS RG LLN+LADLIE + Y++ LE LDNGK YVI+ D++ +K LRYYAG
Sbjct: 75 PWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG 134
Query: 422 YADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPA 601
+ADK HG T DGDF SYTR EPVGV G IIPWN+P ++ K+GPALA G +V+K A
Sbjct: 135 WADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAAKLGPALATGNVVVMKVA 194
Query: 602 EQTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIM 781
EQTPL+AL++ +L AGFP GVVN+VPG+GPTAGAA++SH DV K+ FTGSTE+GH+I
Sbjct: 195 EQTPLTALYVANLTKEAGFPPGVVNVVPGFGPTAGAAIASHEDVDKVAFTGSTEVGHLIQ 254
Query: 782 KTIGETSLKRVTLELGGKSPLII 850
G ++LK+VTLELGGKSP II
Sbjct: 255 VAAGRSNLKKVTLELGGKSPNII 277
>sp|P47738|ALDH2_MOUSE Aldehyde dehydrogenase, mitochondrial precursor (ALDH class 2)
(AHD-M1) (ALDHI) (ALDH-E2)
Length = 519
Score = 294 bits (752), Expect = 3e-79
Identities = 149/263 (56%), Positives = 187/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 65 PEIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGS 244
PE+ +IFINNEW ++ TFPT+NP+ +VI QV EG + GS
Sbjct: 34 PEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAARAAFQLGS 93
Query: 245 EWRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAG 421
WR ++AS RG LL +LADLIE + Y++ LE LDNGK YVI+ D++ +K LRYYAG
Sbjct: 94 PWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAG 153
Query: 422 YADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPA 601
+ADK HG T DGDF SYTR EPVGV G IIPWN+P ++ +K+GPALA G +V+K A
Sbjct: 154 WADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMKVA 213
Query: 602 EQTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIM 781
EQTPL+AL++ +LI AGFP GVVNIVPG+GPTAGAA++SH V K+ FTGSTE+GH+I
Sbjct: 214 EQTPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAIASHEGVDKVAFTGSTEVGHLIQ 273
Query: 782 KTIGETSLKRVTLELGGKSPLII 850
G ++LKRVTLELGGKSP II
Sbjct: 274 VAAGSSNLKRVTLELGGKSPNII 296
>sp|P24549|AL1A1_MOUSE Retinal dehydrogenase 1 (RalDH1) (RALDH 1) (Aldehyde dehydrogenase
family 1 member A1) (Aldehyde dehydrogenase, cytosolic)
(ALHDII) (ALDH-E1)
Length = 501
Score = 294 bits (752), Expect = 3e-79
Identities = 148/263 (56%), Positives = 188/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 68 EIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGSE 247
+I+ TKIFINNEW NS G FP +NP E+VI V+EG + GS
Sbjct: 17 KIQHTKIFINNEWHNSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSP 76
Query: 248 WRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAGY 424
WRT++AS RG LLNKLADL+E + ++ +EAL+ GK + A D+ +K L+Y AG+
Sbjct: 77 WRTMDASERGRLLNKLADLMERDRLLLATMEALNGGKVFANAYLSDLGGCIKALKYCAGW 136
Query: 425 ADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPAE 604
ADKIHG T DGD +YTR EP+GV G IIPWN+P ++ I+K+GPAL+ G T+V+KPAE
Sbjct: 137 ADKIHGQTIPSDGDIFTYTRREPIGVCGQIIPWNFPMLMFIWKIGPALSCGNTVVVKPAE 196
Query: 605 QTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIMK 784
QTPL+AL L LI AGFP GVVNIVPGYGPTAGAA+SSH DV K+ FTGST++G +I +
Sbjct: 197 QTPLTALHLASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKE 256
Query: 785 TIGETSLKRVTLELGGKSPLIIF 853
G+++LKRVTLELGGKSP I+F
Sbjct: 257 AAGKSNLKRVTLELGGKSPCIVF 279
>sp|P51647|AL1A1_RAT Retinal dehydrogenase 1 (RalDH1) (RALDH 1) (Aldehyde dehydrogenase
family 1 member A1) (Aldehyde dehydrogenase, cytosolic)
(ALHDII) (ALDH-E1)
Length = 501
Score = 291 bits (744), Expect = 2e-78
Identities = 145/263 (55%), Positives = 189/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 68 EIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGSE 247
+I+ TKIFINNEW +S G FP +NP E+VI V+EG + GS
Sbjct: 17 KIQHTKIFINNEWHDSVSGKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQAFQIGSP 76
Query: 248 WRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAGY 424
WRT++AS RG LLNKLADL+E + ++ +EA++ GK + A D+ S+K L+Y AG+
Sbjct: 77 WRTMDASERGRLLNKLADLMERDRLLLATIEAINGGKVFANAYLSDLGGSIKALKYCAGW 136
Query: 425 ADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPAE 604
ADKIHG T DGD ++TR EP+GV G IIPWN+P ++ I+K+GPAL+ G T+V+KPAE
Sbjct: 137 ADKIHGQTIPSDGDIFTFTRREPIGVCGQIIPWNFPLLMFIWKIGPALSCGNTVVVKPAE 196
Query: 605 QTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIMK 784
QTPL+AL + LI AGFP GVVNIVPGYGPTAGAA+SSH DV K+ FTGST++G +I +
Sbjct: 197 QTPLTALHMASLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTQVGKLIKE 256
Query: 785 TIGETSLKRVTLELGGKSPLIIF 853
G+++LKRVTLELGGKSP I+F
Sbjct: 257 AAGKSNLKRVTLELGGKSPCIVF 279
>sp|P27463|AL1A1_CHICK Retinal dehydrogenase 1 (RalDH1) (RALDH 1) (Aldehyde dehydrogenase
family 1 member A1) (Aldehyde dehydrogenase, cytosolic)
(ALHDII) (ALDH-E1)
Length = 509
Score = 291 bits (744), Expect = 2e-78
Identities = 147/263 (55%), Positives = 188/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 68 EIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGSE 247
+IK+TKIFINNEW +S G F NP NE+ I +V EG + GS
Sbjct: 25 KIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSP 84
Query: 248 WRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAK-GDIEFSVKILRYYAGY 424
WRT++AS RG LLNKLADL+E + ++ +EA+D GK + A D+ +K +RY AG+
Sbjct: 85 WRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGW 144
Query: 425 ADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPAE 604
ADKIHG T DG+F ++TR EPVGV G IIPWN+P ++ I+K+ PAL G T+V+KPAE
Sbjct: 145 ADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLVMFIWKIAPALCCGNTVVVKPAE 204
Query: 605 QTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIMK 784
QTPLSAL++G LI AGFP GVVNIVPG+GPTAGAA+S H D+ K++FTGSTE+G +I +
Sbjct: 205 QTPLSALYMGSLIKEAGFPPGVVNIVPGFGPTAGAAISHHMDIDKVSFTGSTEVGKLIKE 264
Query: 785 TIGETSLKRVTLELGGKSPLIIF 853
G+T+LKRVTLELGGKSP IIF
Sbjct: 265 AAGKTNLKRVTLELGGKSPNIIF 287
>sp|Q62148|AL1A2_MOUSE Retinal dehydrogenase 2 (RalDH2) (RALDH 2) (RALDH(II))
(Retinaldehyde-specific dehydrogenase type 2) (Aldehyde
dehydrogenase family 1 member A2)
Length = 499
Score = 290 bits (742), Expect = 4e-78
Identities = 144/263 (54%), Positives = 188/263 (71%), Gaps = 1/263 (0%)
Frame = +2
Query: 68 EIKFTKIFINNEWCNSEEGLTFPTINPTNEQVIVQVQEGREXXXXXXXXXXXXXXXXGSE 247
EIK+TKIFINNEW NSE G FP NP + + +VQE + GS
Sbjct: 15 EIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSV 74
Query: 248 WRTLNASARGLLLNKLADLIELEADYISRLEALDNGKSYVIAKG-DIEFSVKILRYYAGY 424
WR ++AS RG LL+KLADL+E + ++ +E+L+ GK ++ A D++ +K LRYYAG+
Sbjct: 75 WRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGW 134
Query: 425 ADKIHGVTTAPDGDFLSYTRIEPVGVVGGIIPWNYPFMLAIFKVGPALAAGCTLVLKPAE 604
ADKIHG+T DGD+ ++TR EP+GV G IIPWN+P ++ +K+ PAL G T+V+KPAE
Sbjct: 135 ADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIKPAE 194
Query: 605 QTPLSALFLGDLILRAGFPKGVVNIVPGYGPTAGAALSSHHDVRKITFTGSTEIGHVIMK 784
QTPLSAL++G LI AGFP GVVNI+PGYGPTAGAA++SH + KI FTGSTE+G +I +
Sbjct: 195 QTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQE 254
Query: 785 TIGETSLKRVTLELGGKSPLIIF 853
G ++LKRVTLELGGKSP IIF
Sbjct: 255 AAGRSNLKRVTLELGGKSPNIIF 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,146,835
Number of Sequences: 369166
Number of extensions: 1676256
Number of successful extensions: 4944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4636
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)