Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_E11
(697 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 235 7e-62
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 234 2e-61
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 232 6e-61
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 232 8e-61
sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-... 230 3e-60
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 229 5e-60
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 229 5e-60
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 228 9e-60
sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-su... 228 1e-59
sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-... 228 1e-59
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 235 bits (600), Expect = 7e-62
Identities = 115/213 (53%), Positives = 145/213 (68%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SV LN P VR HT+ KVP+F +YRR E+ T R + R+ SY
Sbjct: 63 PLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVLDKTKSSRESSDARKVFSYMVTATT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
+ +VT +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 AVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIRKGPAP NLEVP Y+F++D VVVG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 234 bits (596), Expect = 2e-61
Identities = 115/213 (53%), Positives = 147/213 (69%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SVSLN P VR HT+ KVP+F +YRR E+ ST + + R+ SY
Sbjct: 63 PLVASVSLNVPASVRYSHTDI-KVPDFSDYRRPEVLDSTKSSKESSEARKGFSYLVTATT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
+++V+ +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTK 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D ERV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIRKGPAP NLEVP Y+F +D V+VG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 232 bits (592), Expect = 6e-61
Identities = 114/213 (53%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SV LN P VR HT+ KVP+F +YRR E+ T R + R+ SY
Sbjct: 63 PLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVLDKTKSSRESSDARKGFSYLVTAAT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
+ +VT +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 AVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIRKGPAP NLEVP Y+F D V+VG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 232 bits (591), Expect = 8e-61
Identities = 113/213 (53%), Positives = 145/213 (68%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P +V LN P VR HT+ KVP+F +YRR E+ +T R + R+ SY
Sbjct: 63 PLVATVGLNVPASVRYSHTDI-KVPDFSDYRRSEVLDTTKSSRESSDARKGFSYLVTATT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
+ +VT +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 AVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIRKGPAP NLEVP Y+F +D V+VG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274
>sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 230 bits (586), Expect = 3e-60
Identities = 113/213 (53%), Positives = 146/213 (68%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P +V LN P VR HT+ KVP+F +YRR E+ ST + + R+ SY
Sbjct: 63 PLVATVGLNVPASVRFSHTDV-KVPDFSDYRRAEVLDSTKSSKESSEARKGFSYLVTATT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
+++V+ +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTK 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIRKGPAP NLEVP Y+F +D VVVG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPAYEFTSDDVVVVG 274
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 229 bits (584), Expect = 5e-60
Identities = 116/213 (54%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SV LN P V HT+ KVP+F +YRR E+ ST R + R+ SY
Sbjct: 63 PLVASVGLNVPASVCYSHTDV-KVPDFCDYRRPEVLDSTKSSRESSEARKSFSYMVTAVT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
++ VT +SSM +A L+ A IEV LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIR GPAP NLEVP Y+F +D VVVG
Sbjct: 242 HYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 229 bits (584), Expect = 5e-60
Identities = 115/213 (53%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SV LN P V HT+ KVP+F +YRR E+ ST R + R+ SY
Sbjct: 63 PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
+++VT +SSM +A L+ A IE++LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIR GPAP NLEVP Y+F D VVVG
Sbjct: 242 HYDASGRIRLGPAPLNLEVPPYEFTGDDVVVVG 274
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 228 bits (582), Expect = 9e-60
Identities = 115/213 (53%), Positives = 143/213 (67%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SV LN P V HT+ KVP+F EYRR E+ ST R + R+ SY
Sbjct: 63 PLVASVGLNVPASVCYSHTDI-KVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGVT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
++ VT +SSM +A L+ A IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIR GPAP NLEVP Y+F +D V+VG
Sbjct: 242 HYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
>sp|P20788|UCRI_RAT Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) (Liver
regeneration-related protein LRRGT00195)
Length = 274
Score = 228 bits (581), Expect = 1e-59
Identities = 113/213 (53%), Positives = 144/213 (67%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P +V LN P VR HT+ KVP+F +YRR E+ ST + + R+ SY
Sbjct: 63 PLVATVGLNVPASVRYSHTDI-KVPDFSDYRRAEVLDSTKSSKESSEARKGFSYLVTATT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
++ V+ +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTK 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D ERV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIRKGPAP NLEVP Y+F + VVVG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPTYEFTSGDVVVVG 274
>sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 228 bits (581), Expect = 1e-59
Identities = 116/213 (54%), Positives = 144/213 (67%), Gaps = 1/213 (0%)
Frame = +3
Query: 12 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 188
P SV LN P V HT+ KVP+F +YRR E+ ST R + R+ SY
Sbjct: 63 PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSRESSEARKGFSYLVTAVT 121
Query: 189 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 368
++ VT +SSM +A L+ A IE++LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQ 181
Query: 369 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 548
++I +E AV + LR P+ D +RV+KPEW+ILIGICTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 549 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 647
HYD SGRIR GPAP NLEVP Y+F +D VVVG
Sbjct: 242 HYDVSGRIRLGPAPLNLEVPPYEFTSDDMVVVG 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,320,926
Number of Sequences: 369166
Number of extensions: 1620102
Number of successful extensions: 4123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4069
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)