Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_E07
(462 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38652|PGM1_RAT Phosphoglucomutase-1 (Glucose phosphomut... 122 5e-28
sp|Q9D0F9|PGM1_MOUSE Phosphoglucomutase-1 (Glucose phosphom... 120 1e-27
sp|Q4R5E4|PGM1_MACFA Phosphoglucomutase-1 (Glucose phosphom... 119 3e-27
sp|Q9VUY9|PGM_DROME Phosphoglucomutase (Glucose phosphomuta... 119 3e-27
sp|Q7KHA1|PGM_DROSI Phosphoglucomutase (Glucose phosphomuta... 119 3e-27
sp|P36871|PGM1_HUMAN Phosphoglucomutase-1 (Glucose phosphom... 119 4e-27
sp|P00949|PGM1_RABIT Phosphoglucomutase-1 (Glucose phosphom... 118 6e-27
sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precurso... 113 2e-25
sp|Q9SNX2|PGMC_BROIN Phosphoglucomutase, cytoplasmic (Gluco... 113 2e-25
sp|Q9SCY0|PGMP_ARATH Phosphoglucomutase, chloroplast precur... 112 4e-25
>sp|P38652|PGM1_RAT Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 122 bits (305), Expect = 5e-28
Identities = 57/97 (58%), Positives = 78/97 (80%)
Frame = +3
Query: 12 FTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 191
+TV+ ADNF Y+DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+A
Sbjct: 466 YTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDA 525
Query: 192 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 526 AKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9D0F9|PGM1_MOUSE Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 120 bits (301), Expect = 1e-27
Identities = 56/97 (57%), Positives = 77/97 (79%)
Frame = +3
Query: 12 FTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 191
+TV+ ADNF Y+DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+
Sbjct: 466 YTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDV 525
Query: 192 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 526 AKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q4R5E4|PGM1_MACFA Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 119 bits (299), Expect = 3e-27
Identities = 55/97 (56%), Positives = 78/97 (80%)
Frame = +3
Query: 12 FTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 191
+TV+ ADNF Y+DP+D S ++NQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+
Sbjct: 466 YTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIIFRLSGTGSAGATIRLYIDSYEKDV 525
Query: 192 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +V L PL+ I L + Q+++ TGR+APTVIT
Sbjct: 526 AKINQDPQVMLAPLISIALKVSQLQERTGRSAPTVIT 562
>sp|Q9VUY9|PGM_DROME Phosphoglucomutase (Glucose phosphomutase) (PGM)
Length = 560
Score = 119 bits (298), Expect = 3e-27
Identities = 59/100 (59%), Positives = 73/100 (73%)
Frame = +3
Query: 3 GHHFTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYH 182
G + VK ADNF YTDP+D S QG+R++F DGSR++ RLSGTGSSGAT+R+YIDSY
Sbjct: 463 GKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYIDSYE 522
Query: 183 KNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
K + S V LKPL++I L I Q+ + TGRNAPTVIT
Sbjct: 523 KENVLGQAS--VMLKPLIDIALEISQLPKFTGRNAPTVIT 560
>sp|Q7KHA1|PGM_DROSI Phosphoglucomutase (Glucose phosphomutase) (PGM)
Length = 560
Score = 119 bits (298), Expect = 3e-27
Identities = 59/100 (59%), Positives = 73/100 (73%)
Frame = +3
Query: 3 GHHFTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYH 182
G + VK ADNF YTDP+D S QG+R++F DGSR++ RLSGTGSSGAT+R+YIDSY
Sbjct: 463 GKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYIDSYE 522
Query: 183 KNAEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
K + S V LKPL++I L I Q+ + TGRNAPTVIT
Sbjct: 523 KENVLGQAS--VMLKPLIDIALEISQLPKFTGRNAPTVIT 560
>sp|P36871|PGM1_HUMAN Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 119 bits (297), Expect = 4e-27
Identities = 54/97 (55%), Positives = 77/97 (79%)
Frame = +3
Query: 12 FTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 191
+TV+ ADNF Y+DP+D S ++NQG+R++F+DGSR+++RLSGTGS+GATIR+YIDSY K+
Sbjct: 466 YTVEKADNFEYSDPVDGSISRNQGLRLIFTDGSRIVFRLSGTGSAGATIRLYIDSYEKDV 525
Query: 192 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 526 AKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|P00949|PGM1_RABIT Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)
Length = 562
Score = 118 bits (296), Expect = 6e-27
Identities = 56/97 (57%), Positives = 76/97 (78%)
Frame = +3
Query: 12 FTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 191
+TV+ ADNF Y DP+D S +KNQG+R++F+DGSR+I+RLSGTGS+GATIR+YIDSY K+
Sbjct: 466 YTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDN 525
Query: 192 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +V L PL+ I L + Q+++ TGR APTVIT
Sbjct: 526 AKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562
>sp|Q9SM59|PGMP_PEA Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM)
Length = 626
Score = 113 bits (283), Expect = 2e-25
Identities = 48/97 (49%), Positives = 73/97 (75%)
Frame = +3
Query: 12 FTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNA 191
+ ++ AD+F YTDP+D S QG+R +F+DGSR+IYRLSGTGS+GAT+R+YI+ + +
Sbjct: 530 YVLQFADDFTYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDV 589
Query: 192 EVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +++ALKPL+++ LS+ ++K TGR PTVIT
Sbjct: 590 SKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 626
>sp|Q9SNX2|PGMC_BROIN Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM)
Length = 581
Score = 113 bits (283), Expect = 2e-25
Identities = 55/92 (59%), Positives = 71/92 (77%)
Frame = +3
Query: 27 ADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKNAEVAHI 206
AD F YTDP+D S +K+QGIR LF DGSRL++RLSGTGS GATIRIYI+ Y K++
Sbjct: 490 ADEFEYTDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGR 549
Query: 207 SSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
S AL PLV++ L + +I+++TGR+APTVIT
Sbjct: 550 ESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581
>sp|Q9SCY0|PGMP_ARATH Phosphoglucomutase, chloroplast precursor (Glucose phosphomutase)
(PGM)
Length = 623
Score = 112 bits (280), Expect = 4e-25
Identities = 48/98 (48%), Positives = 74/98 (75%)
Frame = +3
Query: 9 HFTVKVADNFLYTDPIDHSHTKNQGIRVLFSDGSRLIYRLSGTGSSGATIRIYIDSYHKN 188
++ ++ AD+F YTDP+D S QG+R +F+DGSR+I+RLSGTGS+GAT+RIYI+ + +
Sbjct: 526 NYVLQFADDFSYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPD 585
Query: 189 AEVAHISSEVALKPLVEIGLSICQIKQITGRNAPTVIT 302
+ +++ALKPL+++ LS+ ++K TGR PTVIT
Sbjct: 586 VSKHDVDAQIALKPLIDLALSVSKLKDFTGREKPTVIT 623
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,401,494
Number of Sequences: 369166
Number of extensions: 974298
Number of successful extensions: 2490
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2484
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)