Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_D23
(537 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 33 0.34
sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic... 33 0.34
sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 32 0.75
sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD... 32 0.99
sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine am... 31 1.7
sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein... 31 2.2
sp|P32856|STX2_HUMAN Epimorphin (Syntaxin-2) 30 2.9
sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3 30 2.9
sp|P32455|GBP1_HUMAN Interferon-induced guanylate-binding p... 30 2.9
sp|Q93099|HGD_HUMAN Homogentisate 1,2-dioxygenase (Homogent... 30 2.9
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 33.5 bits (75), Expect = 0.34
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 153 KETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYK 326
KE +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 166 KENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ 224
Query: 327 VEVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 437
EV V + ++D N+E + D TNDD+
Sbjct: 225 -EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 260
>sp|P23745|ABRA_PLAFG 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 600
Score = 33.5 bits (75), Expect = 0.34
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +3
Query: 153 KETLDLMFNKTEHIYSTL--SKSTYQEIRDQISIENIKWIGQNSIGLLSNIKESLSAKYK 326
KE +D + K ++++ L K+TY + + I ++K G + + + + KY+
Sbjct: 83 KENVDYI-QKNQNLFKELMNQKATYSFVNTKKKIISLKSQGHKKETSQNQNENNDNQKYQ 141
Query: 327 VEVGQNPSVEEVSQNDEDSTHNEEANLRDYLSTNDDQ 437
EV V + ++D N+E + D TNDD+
Sbjct: 142 -EVNDEDDVNDEEDTNDDEDTNDEEDTNDDEDTNDDE 177
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15
Length = 1957
Score = 32.3 bits (72), Expect = 0.75
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Frame = +3
Query: 3 EFTDEMKKNSGDVSKTESTVMQLAQNFS--NKL----RVSVRAMSTVCYNHMSSGNKETL 164
E T G ++ +S + L++N N L + +V+ +ST + + N
Sbjct: 1524 EITASKNNYEGKLNDKDSIIRDLSENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLA 1583
Query: 165 DLMFNKTEHIYSTLSKS------TYQEIR----DQISIENIKWIGQNSIGLLSNIKESLS 314
DL ++K++ + S L +S T +E++ +++S+ QN + LSNIK+SLS
Sbjct: 1584 DLEYHKSQ-VESELGRSKLKLASTTEELQLAENERLSLTTRMLDLQNQVKDLSNIKDSLS 1642
Query: 315 AKYKVEVGQNPSVEEVSQNDEDSTHNEEANLRDYLST 425
+ SV + + + ++ E +L+D L++
Sbjct: 1643 EDLRTLRSLEDSVASLQKECKIKSNTVE-SLQDVLTS 1678
>sp|Q32065|YCX9_CHLRE Hypothetical 341.7 kDa protein in psbD-psbC intergenic region
(ORF2971) (ORFB)
Length = 2971
Score = 32.0 bits (71), Expect = 0.99
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Frame = +3
Query: 18 MKKNSGDVSKT-ESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHI 194
+KKN+ + +S ++A +F N L +S++ YN++S NK L K +
Sbjct: 423 VKKNTVTANLVLDSESQEVATSFQNDL-ISIKYCFNNLYNYIS--NKTALS---TKNLFL 476
Query: 195 YSTLSKSTYQEIRDQ--ISIENIKWIGQNSIGLLSNIKESLSA 317
+S + + + R Q S+EN +G NS + + K S++A
Sbjct: 477 FSAIKSNATKHKRTQSFFSVENTTTLGNNSNFVKGHFKSSINA 519
>sp|Q8K908|AMIB_BUCAP Putative N-acetylmuramoyl-L-alanine amidase
Length = 233
Score = 31.2 bits (69), Expect = 1.7
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 153 KETLDLMFNKTEHIYSTLSKSTYQEIRDQISIENIKWIGQNSIGLLSNI 299
K LDL FN + + LS+ +Q+++ I ++ I + S+G+LS+I
Sbjct: 133 KTVLDLQFNNFQKMEINLSRYIFQQLKKIIKLDKIN-LNYASLGILSSI 180
>sp|Q7TMY7|IPO8_MOUSE Importin-8 (Imp8) (Ran-binding protein 8) (RanBP8)
Length = 1010
Score = 30.8 bits (68), Expect = 2.2
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 74 PELLQQIESVCPSHVNRVLQSHVL 145
PE++QQ+E++C ++ VLQ HV+
Sbjct: 626 PEIIQQLENICLRIIDLVLQKHVI 649
>sp|P32856|STX2_HUMAN Epimorphin (Syntaxin-2)
Length = 288
Score = 30.4 bits (67), Expect = 2.9
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Frame = +3
Query: 3 EFTDEMKKN----------SGDVSKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGN 152
++ +E+KKN G + + + + + +NK+R ++A+ ++ SGN
Sbjct: 48 QYVEEVKKNHSIILSAPNPEGKIKEELEDLNKEIKKTANKIRAKLKAIEQ-SFDQDESGN 106
Query: 153 KETLDLMFNKTEHIYSTLSK 212
+ ++DL +T+H S LS+
Sbjct: 107 RTSVDLRIRRTQH--SVLSR 124
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/DLP1/DLP3
Length = 3497
Score = 30.4 bits (67), Expect = 2.9
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 225 EIRDQISIENIKWIGQNSIGLLSNIKESLSAKYKVEVGQNPSVEEVSQNDEDSTHNEEAN 404
E + + I ++ +S+ + S KE +K K + + P + +VS NDEDS EE
Sbjct: 1787 EYVETVQIVDLSEDSDSSVRVDSQGKEMRRSKSKHSLNETP-LPKVSDNDEDSAEQEEDL 1845
Query: 405 LR 410
LR
Sbjct: 1846 LR 1847
>sp|P32455|GBP1_HUMAN Interferon-induced guanylate-binding protein 1 (GTP-binding protein
1) (Guanine nucleotide-binding protein 1) (HuGBP-1)
Length = 592
Score = 30.4 bits (67), Expect = 2.9
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +3
Query: 33 GDVSKTESTVMQLAQNFSNKLRVSVRAMSTVCYNHMSSGNKETLDLMFNKTEHIYSTLSK 212
GDV K ++ QN S ++V ST YN + + N++ +D ++ TE + SK
Sbjct: 102 GDVEKGDN------QNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSK 155
Query: 213 STYQEIRDQI 242
S+ E +++
Sbjct: 156 SSPDENENEV 165
>sp|Q93099|HGD_HUMAN Homogentisate 1,2-dioxygenase (Homogentisicase) (Homogentisate
oxygenase) (Homogentisic acid oxidase)
Length = 445
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 127 ATITCpreTRKRWILCSIKPSISTPPYQN 213
+ TCPR T KR L I PS+S P+++
Sbjct: 47 SAFTCPRSTNKRSWLYRILPSVSHKPFES 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,054,602
Number of Sequences: 369166
Number of extensions: 1182119
Number of successful extensions: 3861
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3855
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)