Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_D16
(520 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A (T... 290 1e-78
sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A (TAT... 290 1e-78
sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A (T... 284 8e-77
sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B ... 284 8e-77
sp|P46465|PRS6A_ORYSA 26S protease regulatory subunit 6A ho... 258 6e-69
sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A ho... 257 1e-68
sp|P54776|PRS6A_LYCES 26S protease regulatory subunit 6A ho... 257 1e-68
sp|O04019|PRS6A_ARATH 26S protease regulatory subunit 6A ho... 254 9e-68
sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A 243 2e-64
sp|P33297|PRS6A_YEAST 26S protease regulatory subunit 6A (T... 243 3e-64
>sp|P17980|PRS6A_HUMAN 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
(Proteasome subunit P50)
Length = 439
Score = 290 bits (742), Expect = 1e-78
Identities = 144/162 (88%), Positives = 151/162 (93%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
KAP+IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN +KVIAATNRVDI
Sbjct: 278 KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDI 337
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPALLRSGRLDRKIEFP PNEEARARIMQIHSRKMNV+ DVN+EELARCTDDFNGAQCK
Sbjct: 338 LDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCK 397
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGMIALRRGA + HEDYM+ ILEVQA+KK L YYA
Sbjct: 398 AVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
>sp|Q63569|PRS6A_RAT 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
(Spermatogenic cell/sperm-associated TAT-binding protein
homolog SATA)
Length = 439
Score = 290 bits (742), Expect = 1e-78
Identities = 144/162 (88%), Positives = 151/162 (93%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
KAP+IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN +KVIAATNRVDI
Sbjct: 278 KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDI 337
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPALLRSGRLDRKIEFP PNEEARARIMQIHSRKMNV+ DVN+EELARCTDDFNGAQCK
Sbjct: 338 LDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCK 397
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGMIALRRGA + HEDYM+ ILEVQA+KK L YYA
Sbjct: 398 AVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
>sp|O88685|PRS6A_MOUSE 26S protease regulatory subunit 6A (TAT-binding protein 1) (TBP-1)
Length = 442
Score = 284 bits (727), Expect = 8e-77
Identities = 142/162 (87%), Positives = 150/162 (92%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
KAP+IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPN +KVIAATNRVDI
Sbjct: 281 KAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDI 340
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPALLRSGRLDRKIEFP PNEEARARIMQIHSRKMNV+ DVN+EELARCTDDFNGAQ K
Sbjct: 341 LDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSK 400
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGMIALRRGA + HED+M+ ILEVQA+KK L YYA
Sbjct: 401 AVCVEAGMIALRRGATELTHEDHMEGILEVQAKKKANLQYYA 442
>sp|O42586|PR6AB_XENLA 26S protease regulatory subunit 6A-B (TAT-binding protein 10)
(TBP-10)
Length = 404
Score = 284 bits (727), Expect = 8e-77
Identities = 141/162 (87%), Positives = 149/162 (91%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
KAP+IIFIDELDAIG KRFDSEKAGDREVQRTMLELLNQLDGFQP +KVIAATNRVDI
Sbjct: 243 KAPSIIFIDELDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDI 302
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPALLRSGRLDRKIEFP PNEEARARIMQIHSRKMNV+ DVN+EELARCTDDFNGAQCK
Sbjct: 303 LDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCK 362
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAG+IALRRGA + HEDYM+ ILEVQA+KK L YYA
Sbjct: 363 AVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 404
>sp|P46465|PRS6A_ORYSA 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 429
Score = 258 bits (659), Expect = 6e-69
Identities = 129/162 (79%), Positives = 144/162 (88%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
K+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF + IKVIAATNR DI
Sbjct: 268 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADI 327
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPAL+RSGRLDRKIEFP P+EEARARI+QIHSRKMNV DVNFEELAR TDDFNGAQ K
Sbjct: 328 LDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLK 387
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGM+ALRR A V HED+ + I++VQA+KK++LNYYA
Sbjct: 388 AVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA 429
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 424
Score = 257 bits (657), Expect = 1e-68
Identities = 130/162 (80%), Positives = 142/162 (87%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
KAP IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF + IKVIAATNR DI
Sbjct: 263 KAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADI 322
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPAL+RSGRLDRKIEFP P EEARARI+QIHSRKMNV DVNFEELAR TDDFNGAQ K
Sbjct: 323 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLK 382
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGM+ALRR A V HED+ + I++VQA+KK +LNYYA
Sbjct: 383 AVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424
>sp|P54776|PRS6A_LYCES 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1) (Mg(2+)-dependent ATPase 1) (LEMA-1)
Length = 423
Score = 257 bits (656), Expect = 1e-68
Identities = 129/162 (79%), Positives = 142/162 (87%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
K+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF + IKVIAATNR DI
Sbjct: 262 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 321
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPAL+RSGRLDRKIEFP P EEARARI+QIHSRKMNV DVNFEELAR TDDFNGAQ K
Sbjct: 322 LDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLK 381
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGM+ALRR A V HED+ + I++VQA+KK +LNYYA
Sbjct: 382 AVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKASLNYYA 423
>sp|O04019|PRS6A_ARATH 26S protease regulatory subunit 6A homolog (TAT-binding protein
homolog 1) (TBP-1)
Length = 419
Score = 254 bits (649), Expect = 9e-68
Identities = 128/162 (79%), Positives = 141/162 (87%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
K+P IIFIDE+DAIGTKRFDSE +GDREVQRTMLELLNQLDGF + IKVIAATNR DI
Sbjct: 258 KSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADI 317
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPAL+RSGRLDRKIEFP P EEAR RI+QIHSRKMNV DVNFEELAR TDDFNGAQ K
Sbjct: 318 LDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLK 377
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AVCVEAGM+ALRR A V HED+ + I++VQA+KK +LNYYA
Sbjct: 378 AVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 419
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A
Length = 438
Score = 243 bits (621), Expect = 2e-64
Identities = 121/162 (74%), Positives = 138/162 (85%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
K+P IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF + +KVIAATNRVD
Sbjct: 277 KSPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDT 336
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPALLRSGRLDRK+EFP PNEEAR I++IHSRKM + D+N+EELAR TD++NGA K
Sbjct: 337 LDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLK 396
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
+VCVEAGMIALR+G ++ HE +MD ILEVQ RK TL Y+A
Sbjct: 397 SVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSKTLQYFA 438
>sp|P33297|PRS6A_YEAST 26S protease regulatory subunit 6A (TAT-binding protein homolog 1)
(TBP-1)
Length = 434
Score = 243 bits (619), Expect = 3e-64
Identities = 120/162 (74%), Positives = 141/162 (87%)
Frame = +2
Query: 5 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNHDIKVIAATNRVDI 184
KAPTIIFIDELDAIGTKRFDSEK+GDREVQRTMLELLNQLDGF + +KV+AATNRVD+
Sbjct: 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332
Query: 185 LDPALLRSGRLDRKIEFPAPNEEARARIMQIHSRKMNVAKDVNFEELARCTDDFNGAQCK 364
LDPALLRSGRLDRKIEFP P+E++RA+I+QIHSRKM D+N++ELAR TD+FNGAQ K
Sbjct: 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK 392
Query: 365 AVCVEAGMIALRRGADRVVHEDYMDAILEVQARKKTTLNYYA 490
AV VEAGMIALR G V HED+++ I EVQARK ++++YA
Sbjct: 393 AVTVEAGMIALRNGQSSVKHEDFVEGISEVQARKSKSVSFYA 434
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,999,769
Number of Sequences: 369166
Number of extensions: 989052
Number of successful extensions: 3306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)