Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_D07
(678 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate... 225 7e-59
sp|P40792|RAC1_DROME Ras-related protein Rac1 224 2e-58
sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substra... 221 2e-57
sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substra... 219 4e-57
sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substra... 219 5e-57
sp|P48554|RAC2_DROME Ras-related protein Rac2 218 1e-56
sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substra... 218 1e-56
sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substra... 216 4e-56
sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxi... 213 5e-55
sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse... 207 2e-53
>sp|Q6RUV5|RAC1_RAT Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63001|RAC1_MOUSE Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
sp|P63000|RAC1_HUMAN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Ras-like
protein TC25)
sp|P62999|RAC1_CANFA Ras-related C3 botulinum toxin substrate 1 (p21-Rac1) (Rac2)
sp|P62998|RAC1_BOVIN Ras-related C3 botulinum toxin substrate 1 (p21-Rac1)
Length = 192
Score = 225 bits (574), Expect = 7e-59
Identities = 106/138 (76%), Positives = 122/138 (88%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL++ +S+ENVRAKWYPE+ HHCPNTPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E ++++ TPI YPQGL +AKEIGAVKYLECSALTQ+GLK+VFDEA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172
Query: 376 IRAVLCPKPPRKKTCKFL 429
IRAVLCP P +K+ K L
Sbjct: 173 IRAVLCPPPVKKRKRKCL 190
>sp|P40792|RAC1_DROME Ras-related protein Rac1
Length = 192
Score = 224 bits (571), Expect = 2e-58
Identities = 107/140 (76%), Positives = 121/140 (86%), Gaps = 2/140 (1%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL+N +S+ENVRAKWYPE+ HHCP+TPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWYPEVRHHCPSTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E RD++ PI YPQGL +AKEIGAVKYLECSALTQKGLK+VFDEA
Sbjct: 113 VGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEA 172
Query: 376 IRAVLCP--KPPRKKTCKFL 429
IR+VLCP +P K+ C L
Sbjct: 173 IRSVLCPVLQPKSKRKCALL 192
>sp|Q9TU25|RAC2_BOVIN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 221 bits (562), Expect = 2e-57
Identities = 104/140 (74%), Positives = 122/140 (87%), Gaps = 2/140 (1%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL++ +SYENVRAKW+PE+ HHCP+TPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E ++++ PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
Query: 376 IRAVLCPKP--PRKKTCKFL 429
IRAVLCP+P P+K+ C L
Sbjct: 173 IRAVLCPQPTRPQKRPCSIL 192
>sp|P15153|RAC2_HUMAN Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (Small G
protein) (GX)
Length = 192
Score = 219 bits (559), Expect = 4e-57
Identities = 104/140 (74%), Positives = 121/140 (86%), Gaps = 2/140 (1%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL++ +SYENVRAKW+PE+ HHCP+TPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E ++++ PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
Query: 376 IRAVLCPKPPR--KKTCKFL 429
IRAVLCP+P R K+ C L
Sbjct: 173 IRAVLCPQPTRQQKRACSLL 192
>sp|P60764|RAC3_MOUSE Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
sp|P60763|RAC3_HUMAN Ras-related C3 botulinum toxin substrate 3 (p21-Rac3)
Length = 192
Score = 219 bits (558), Expect = 5e-57
Identities = 101/132 (76%), Positives = 118/132 (89%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL++ +S+ENVRAKWYPE+ HHCP+TPI+L
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E RD++ PI YPQGL +A+EIG+VKYLECSALTQ+GLK+VFDEA
Sbjct: 113 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 172
Query: 376 IRAVLCPKPPRK 411
IRAVLCP P +K
Sbjct: 173 IRAVLCPPPVKK 184
>sp|P48554|RAC2_DROME Ras-related protein Rac2
Length = 192
Score = 218 bits (555), Expect = 1e-56
Identities = 103/140 (73%), Positives = 120/140 (85%), Gaps = 2/140 (1%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL+N +S+ENVRAKW+PE+ HHCP+ PIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E +D++ TPI YPQGL +AKEI AVKYLECSALTQKGLK+VFDEA
Sbjct: 113 VGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQKGLKTVFDEA 172
Query: 376 IRAVLCP--KPPRKKTCKFL 429
IR+VLCP + P++ C L
Sbjct: 173 IRSVLCPVVRGPKRHKCALL 192
>sp|Q05144|RAC2_MOUSE Ras-related C3 botulinum toxin substrate 2 (p21-Rac2) (EN-7
protein)
Length = 192
Score = 218 bits (555), Expect = 1e-56
Identities = 103/140 (73%), Positives = 121/140 (86%), Gaps = 2/140 (1%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL++ +SYENVRAKW+PE+ HHCP+TPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ E ++++ PI YPQGL LAK+I +VKYLECSALTQ+GLK+VFDEA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQRGLKTVFDEA 172
Query: 376 IRAVLCPKPPR--KKTCKFL 429
IRAVLCP+P R K+ C L
Sbjct: 173 IRAVLCPQPTRQQKRPCSLL 192
>sp|O88931|RAC2_CAVPO Ras-related C3 botulinum toxin substrate 2 (p21-Rac2)
Length = 192
Score = 216 bits (550), Expect = 4e-56
Identities = 101/140 (72%), Positives = 120/140 (85%), Gaps = 2/140 (1%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSL++ +SYENV A WYP++ HHCP+TPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVHANWYPKVRHHCPSTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
+GTKLDLR++ E ++++ PI YPQGL LAKEI +VKYLECSALTQ+GLK+VFDEA
Sbjct: 113 LGTKLDLRDDKETIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172
Query: 376 IRAVLCPKP--PRKKTCKFL 429
IRAVLCP+P P+K+ C L
Sbjct: 173 IRAVLCPQPTRPQKRACSLL 192
>sp|O95916|RAC4_HUMAN Putative Ras-related C3 botulinum toxin substrate 4 (p21-Rac4)
Length = 192
Score = 213 bits (541), Expect = 5e-55
Identities = 99/138 (71%), Positives = 119/138 (86%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLW+TAGQEDYDRLRPLSYPQ DVFLICFSL++ +S+ENV AKWYPE+ HHCPNTPIIL
Sbjct: 53 LGLWNTAGQEDYDRLRPLSYPQADVFLICFSLVSPASFENVLAKWYPEVQHHCPNTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTKLDLR++ + ++++ TPI YPQGL +AKE+GAVKYLEC ALT++GLK+VFDEA
Sbjct: 113 VGTKLDLRDDKDRIQKLKEKKLTPITYPQGLAMAKEMGAVKYLECLALTRRGLKTVFDEA 172
Query: 376 IRAVLCPKPPRKKTCKFL 429
IRAVLCP P +K+ K L
Sbjct: 173 IRAVLCPPPVKKRKRKCL 190
>sp|Q03206|RAC1_CAEEL RAS-related protein rac-1 (Cell-corpse engulfment protein ced-10)
(CErac1)
Length = 191
Score = 207 bits (527), Expect = 2e-53
Identities = 100/134 (74%), Positives = 113/134 (84%)
Frame = +1
Query: 16 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLINSSSYENVRAKWYPEITHHCPNTPIIL 195
LGLWDTAGQEDYDRLRPLSYPQTDVFL+CF+L N +S+ENVRAKWYPE++HHCPNTPIIL
Sbjct: 53 LGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIIL 112
Query: 196 VGTKLDLRENLINGEAGRDRRNTPINYPQGLVLAKEIGAVKYLECSALTQKGLKSVFDEA 375
VGTK DLRE+ E R+RR P++ QG V+AKEI AVKYLECSALTQ+GLK VFDEA
Sbjct: 113 VGTKADLREDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEA 172
Query: 376 IRAVLCPKPPRKKT 417
IRAVL P KK+
Sbjct: 173 IRAVLTPPQRAKKS 186
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,445,480
Number of Sequences: 369166
Number of extensions: 1615093
Number of successful extensions: 3965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3785
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)