Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_D04
(710 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41116|RL8_XENLA 60S ribosomal protein L8 360 2e-99
sp|P62919|RL8_RAT 60S ribosomal protein L8 >gi|51702824|sp|... 360 2e-99
sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8 359 5e-99
sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8 358 6e-99
sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8 355 5e-98
sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8 350 2e-96
sp|P41569|RL8_AEDAL 60S ribosomal protein L8 345 9e-95
sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8 >gi|51701882|s... 343 2e-94
sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8 342 4e-94
sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8 342 6e-94
>sp|P41116|RL8_XENLA 60S ribosomal protein L8
Length = 257
Score = 360 bits (925), Expect = 2e-99
Identities = 163/224 (72%), Positives = 199/224 (88%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
RA D+AERNG++KGIV+DIIHDPGRGAPLAKV F+DPY++KK + F+AAEG+ TGQFVY
Sbjct: 30 RAIDFAERNGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVY 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG++ARASGN A ++SHN ET KTRVK
Sbjct: 90 CGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVK 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+H
Sbjct: 150 LPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 672
P GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 210 PFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P62919|RL8_RAT 60S ribosomal protein L8
sp|P62918|RL8_MOUSE 60S ribosomal protein L8
sp|P62917|RL8_HUMAN 60S ribosomal protein L8
Length = 257
Score = 360 bits (924), Expect = 2e-99
Identities = 164/224 (73%), Positives = 199/224 (88%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
RA D+AER+G++KGIV+DIIHDPGRGAPLAKV F+DPY++KK + FIAAEG+ TGQFVY
Sbjct: 30 RAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVY 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++SHN ET KTRVK
Sbjct: 90 CGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVK 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+H
Sbjct: 150 LPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 672
P GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 210 PFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q6PBF0|RL8_XENTR 60S ribosomal protein L8
Length = 257
Score = 359 bits (921), Expect = 5e-99
Identities = 162/224 (72%), Positives = 199/224 (88%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
RA D+AER+G++KGIV+DIIHDPGRGAPLAKV F+DPY++KK + F+AAEG+ TGQFVY
Sbjct: 30 RAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVAFRDPYRFKKRTELFVAAEGIHTGQFVY 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CGKKA++N+GNVLP+ ++PEGT++C +EEK GDRG++ARASGN A ++SHN ET KTRVK
Sbjct: 90 CGKKAQLNIGNVLPVGTMPEGTIVCCVEEKPGDRGKLARASGNYATVISHNPETKKTRVK 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+H
Sbjct: 150 LPSGSKKVISSANRAIVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 672
P GGGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 210 PFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q5R7Y8|RL8_PONPY 60S ribosomal protein L8
Length = 257
Score = 358 bits (920), Expect = 6e-99
Identities = 163/224 (72%), Positives = 198/224 (88%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
RA D+AER+G++KGIV+DIIHDPGRGAPLAKV F+DPY++KK + FIAAEG+ TGQFVY
Sbjct: 30 RAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVY 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CGKKA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++SHN ET KTRVK
Sbjct: 90 CGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVK 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+H
Sbjct: 150 LPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 672
P GGGNHQHIG PST+ R GRKVGL+A RRTG LRGTK ++
Sbjct: 210 PFGGGNHQHIGKPSTIRRDAPAGRKVGLIAVRRTGRLRGTKTVQ 253
>sp|Q6P0V6|RL8_BRARE 60S ribosomal protein L8
Length = 257
Score = 355 bits (912), Expect = 5e-98
Identities = 160/221 (72%), Positives = 197/221 (89%)
Frame = +1
Query: 10 DYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGK 189
D+AER+G++KGIV+DIIHDPGRGAPLAKV F+DPY++KK + FIAAEG+ TGQF+YCGK
Sbjct: 33 DFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGK 92
Query: 190 KAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPS 369
KA++N+GNVLP+ ++PEGT++C LEEK GDRG++ARASGN A ++SHN ET K+RVKLPS
Sbjct: 93 KAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPS 152
Query: 370 GQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHG 549
G KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYKAKRNCWPRVRGV MNPV+HP G
Sbjct: 153 GSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFG 212
Query: 550 GGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 672
GGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 213 GGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|Q90YW1|RL8_ICTPU 60S ribosomal protein L8
Length = 257
Score = 350 bits (898), Expect = 2e-96
Identities = 159/221 (71%), Positives = 194/221 (87%)
Frame = +1
Query: 10 DYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGK 189
D+AER+G++KGIV+DIIHDPGRG PLAKV F+DPY++KK + FIAAEG+ TGQFV+CGK
Sbjct: 33 DFAERHGYIKGIVKDIIHDPGRGTPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVFCGK 92
Query: 190 KAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPS 369
KA++N+GNVLP+ +PEGT+IC LEEK GDRG++ARASGN A ++SHN ET K+RVKLPS
Sbjct: 93 KAQLNIGNVLPVGVMPEGTIICCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPS 152
Query: 370 GQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHG 549
G KK++SS+ RA++G+VAGGGRI+KP+LKAGRAYHKYK KRNCWPRVRGV MNPV+HP G
Sbjct: 153 GAKKVISSTNRAVVGVVAGGGRIDKPILKAGRAYHKYKVKRNCWPRVRGVAMNPVEHPFG 212
Query: 550 GGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIK 672
GGNHQHIG PST+ R GRKVGL+AARRTG LRGTK ++
Sbjct: 213 GGNHQHIGKPSTIRRDVPAGRKVGLIAARRTGRLRGTKTVQ 253
>sp|P41569|RL8_AEDAL 60S ribosomal protein L8
Length = 261
Score = 345 bits (884), Expect = 9e-95
Identities = 160/221 (72%), Positives = 189/221 (85%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
RA DYAER+G+LKG V+ IIHDPGRGAPLA V F+DPYK+ Q FIAAEGM TGQFVY
Sbjct: 30 RALDYAERHGYLKGTVKQIIHDPGRGAPLAVVHFRDPYKFNVRKQLFIAAEGMYTGQFVY 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CGK+A++ +GNVLPI +PEGT++CNLEEK+GDRG++AR SGN A +++HN +T +TRVK
Sbjct: 90 CGKRAQLQIGNVLPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVK 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAY KYK KRNCWP+VRGV MNPV+H
Sbjct: 150 LPSGAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYRKYKVKRNCWPKVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 663
PHGGGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 210 PHGGGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
>sp|Q95V39|RL8_SPOFR 60S ribosomal protein L8
sp|Q6RYS3|RL8_MAMBR 60S ribosomal protein L8
Length = 257
Score = 343 bits (881), Expect = 2e-94
Identities = 158/221 (71%), Positives = 187/221 (84%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
R+ DYAER+G++KG+V+DIIHDPGRGAPLA V F+DPYK+K + FIA EG+ TGQFVY
Sbjct: 30 RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVY 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CGKKA + VGNV+P+ ++PEGT++CNLEEK GDRGR+ARASGN A ++ HN + +TRVK
Sbjct: 90 CGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVK 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK+L SS R M+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP VRGV MNPV+H
Sbjct: 150 LPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 663
PHGGGNHQHIG STV R T GRKVGL+AARRTG +RG K
Sbjct: 210 PHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGK 250
>sp|Q9XVF7|RL8_CAEEL 60S ribosomal protein L8
Length = 260
Score = 342 bits (878), Expect = 4e-94
Identities = 156/228 (68%), Positives = 192/228 (84%)
Frame = +1
Query: 1 RAEDYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVY 180
R DYAER+G++KG+V+DIIHDPGRGAPLA + F+DPYKYK V T +AAEGM TGQF++
Sbjct: 30 RPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIH 89
Query: 181 CGKKAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVK 360
CG KA+I +GN++P+ ++PEGT ICN+E KSGDRG IARASGN A +++HN +T KTR++
Sbjct: 90 CGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIR 149
Query: 361 LPSGQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDH 540
LPSG KK++ S RAMIG+VAGGGR +KP+LKAGR+YHKYKAKRN WPRVRGV MNPV+H
Sbjct: 150 LPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEH 209
Query: 541 PHGGGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTKVIKTTKQ 684
PHGGGNHQHIG PSTV R G+KVGL+AARRTG +RG K +K TK+
Sbjct: 210 PHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRGGKPVKFTKE 257
>sp|Q9U9L2|RL8_ANOGA 60S ribosomal protein L8
Length = 261
Score = 342 bits (877), Expect = 6e-94
Identities = 155/218 (71%), Positives = 189/218 (86%)
Frame = +1
Query: 10 DYAERNGFLKGIVRDIIHDPGRGAPLAKVEFKDPYKYKKVMQTFIAAEGMSTGQFVYCGK 189
DYAER+G+LKG+V+ II DPGRGAPLA V F+DPY+++ Q FIAAEGM TGQFVYCG+
Sbjct: 33 DYAERHGYLKGVVKQIIQDPGRGAPLAVVNFRDPYRFRLSKQLFIAAEGMYTGQFVYCGR 92
Query: 190 KAKINVGNVLPIKSIPEGTVICNLEEKSGDRGRIARASGNSAIIVSHNSETNKTRVKLPS 369
+A++ +GNV+PI +PEGT++CNLEEK+GDRG++AR SGN A +++HN +T +TRVKLPS
Sbjct: 93 RAQLQIGNVIPIGLMPEGTIVCNLEEKTGDRGKLARTSGNYASVIAHNPDTKRTRVKLPS 152
Query: 370 GQKKLLSSSCRAMIGIVAGGGRIEKPMLKAGRAYHKYKAKRNCWPRVRGVCMNPVDHPHG 549
G KK+L S+ RAM+GIVAGGGRI+KP+LKAGRAYHKYK KRNCWP+VRGV MNPV+HPHG
Sbjct: 153 GAKKVLPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPKVRGVAMNPVEHPHG 212
Query: 550 GGNHQHIGTPSTVSRHTVPGRKVGLVAARRTGLLRGTK 663
GGNHQHIG STV R T PGRKVGL+AARRTG +RG K
Sbjct: 213 GGNHQHIGKASTVKRGTPPGRKVGLIAARRTGRIRGGK 250
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,503,370
Number of Sequences: 369166
Number of extensions: 1783109
Number of successful extensions: 5316
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4935
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)