Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C20-1
(180 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25886|RL29_RAT 60S ribosomal protein L29 (P23) 94 1e-19
sp|P47914|RL29_HUMAN 60S ribosomal protein L29 (Cell surfac... 94 1e-19
sp|P47915|RL29_MOUSE 60S ribosomal protein L29 94 1e-19
sp|Q95281|RL29_PIG 60S ribosomal protein L29 94 1e-19
sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 94 1e-19
sp|Q24154|RL29_DROME 60S ribosomal protein L29 (L43) 75 5e-14
sp|P05747|RL29_YEAST 60S ribosomal protein L29 (YL43) 74 1e-13
sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 (L43) 71 9e-13
>sp|P25886|RL29_RAT 60S ribosomal protein L29 (P23)
Length = 156
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKKHNKK 30
KSKNHT+HNQ++K HRNGIKKP QRY SLKGVDPKFL+NMRFAKKHNKK
Sbjct: 3 KSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 (Cell surface heparin binding protein
HIP)
Length = 159
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKKHNKK 30
KSKNHT+HNQ++K HRNGIKKP QRY SLKGVDPKFL+NMRFAKKHNKK
Sbjct: 3 KSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|P47915|RL29_MOUSE 60S ribosomal protein L29
Length = 160
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKKHNKK 30
KSKNHT+HNQ++K HRNGIKKP QRY SLKGVDPKFL+NMRFAKKHNKK
Sbjct: 3 KSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q95281|RL29_PIG 60S ribosomal protein L29
Length = 160
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKKHNKK 30
KSKNHT+HNQ++K HRNGIKKP QRY SLKGVDPKFL+NMRFAKKHNKK
Sbjct: 3 KSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29
Length = 157
Score = 93.6 bits (231), Expect = 1e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKKHNKK 30
KSKNHT+HNQ++K HRNGIKKP QRY SLKGVDPKFL+NMRFAKKHNKK
Sbjct: 3 KSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q24154|RL29_DROME 60S ribosomal protein L29 (L43)
Length = 76
Score = 75.1 bits (183), Expect = 5e-14
Identities = 33/48 (68%), Positives = 41/48 (85%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKKHN 36
KSKNHT+HNQNKKAHRNGIK+P+R+R+ S G+D KFL N R+A+K N
Sbjct: 3 KSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGN 50
>sp|P05747|RL29_YEAST 60S ribosomal protein L29 (YL43)
Length = 59
Score = 73.6 bits (179), Expect = 1e-13
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFA 48
KSKNHT+HNQ +KAHRNGIKKP +YPSLKGVDPKF +N + A
Sbjct: 3 KSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46
>sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 (L43)
Length = 61
Score = 70.9 bits (172), Expect = 9e-13
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = -2
Query: 179 KSKNHTSHNQNKKAHRNGIKKPMRQRYPSLKGVDPKFLKNMRFAKK 42
KSKNHT+HNQNKKAHRNGIK+P + RY SLK D KF +N +FA +
Sbjct: 3 KSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANR 48
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,815,907
Number of Sequences: 369166
Number of extensions: 225343
Number of successful extensions: 658
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 68,354,980
effective HSP length: 32
effective length of database: 62,443,460
effective search space used: 1685973420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)