Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C10
(860 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53471|ACT2_SCHMA Actin-2 499 e-141
sp|Q26065|ACT_PLAMG Actin, adductor muscle 498 e-141
sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin) 498 e-140
sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin) >gi|... 498 e-140
sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin) >gi... 498 e-140
sp|P63256|ACTG_ANSAN Actin, cytoplasmic 2 (Gamma-actin) 498 e-140
sp|P53505|ACT5_XENLA Actin, cytoplasmic type 5 498 e-140
sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 (Beta-actin) 498 e-140
sp|P30163|ACT2_ONCVO Actin-2 497 e-140
sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5 497 e-140
>sp|P53471|ACT2_SCHMA Actin-2
Length = 376
Score = 499 bits (1285), Expect = e-141
Identities = 248/254 (97%), Positives = 252/254 (99%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYV IQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVGIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 242
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMESAG+HETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRKDLYANTVLSG 302
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TM+PGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GTTMFPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 722 YDESGPGIVHRKCF 763
YDESGPGIVHRKCF
Sbjct: 363 YDESGPGIVHRKCF 376
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 498 bits (1282), Expect = e-141
Identities = 248/254 (97%), Positives = 252/254 (99%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFE EMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 242
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETT+NSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSG 302
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TM+PGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 363 YDESGPSIVHRKCF 376
>sp|P29751|ACTB_RABIT Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 498 bits (1281), Expect = e-140
Identities = 247/254 (97%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 301
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375
>sp|P60712|ACTB_BOVIN Actin, cytoplasmic 1 (Beta-actin)
sp|P60713|ACTB_SHEEP Actin, cytoplasmic 1 (Beta-actin)
sp|Q5R1X3|ACTB_PANTR Actin, cytoplasmic 1 (Beta-actin)
sp|P60710|ACTB_MOUSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q711N9|ACTB_MESAU Actin, cytoplasmic 1 (Beta-actin)
sp|P60708|ACTB_HORSE Actin, cytoplasmic 1 (Beta-actin)
sp|Q76N69|ACTB_CERAE Actin, cytoplasmic 1 (Beta-actin)
sp|Q71FK5|ACTB_CAVPO Actin, cytoplasmic 1 (Beta-actin)
sp|P60707|ACTB_TRIVU Actin, cytoplasmic 1 (Beta-actin)
sp|P60711|ACTB_RAT Actin, cytoplasmic 1 (Beta-actin)
sp|P60709|ACTB_HUMAN Actin, cytoplasmic 1 (Beta-actin)
sp|P60706|ACTB_CHICK Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 498 bits (1281), Expect = e-140
Identities = 247/254 (97%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 301
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375
>sp|P63260|ACTG_MOUSE Actin, cytoplasmic 2 (Gamma-actin)
sp|P63259|ACTG_RAT Actin, cytoplasmic 2 (Gamma-actin)
sp|P63257|ACTG_TRIVU Actin, cytoplasmic 2 (Gamma-actin)
sp|P63261|ACTG_HUMAN Actin, cytoplasmic 2 (Gamma-actin)
sp|P63258|ACTG_BOVIN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 498 bits (1281), Expect = e-140
Identities = 247/254 (97%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 301
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375
>sp|P63256|ACTG_ANSAN Actin, cytoplasmic 2 (Gamma-actin)
Length = 375
Score = 498 bits (1281), Expect = e-140
Identities = 247/254 (97%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 301
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375
>sp|P53505|ACT5_XENLA Actin, cytoplasmic type 5
Length = 376
Score = 498 bits (1281), Expect = e-140
Identities = 247/254 (97%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 242
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 302
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 363 YDESGPSIVHRKCF 376
>sp|P84336|ACTB_CAMDR Actin, cytoplasmic 1 (Beta-actin)
Length = 375
Score = 498 bits (1281), Expect = e-140
Identities = 247/254 (97%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 122 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 181
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 241
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE+LFQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 301
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 362 YDESGPSIVHRKCF 375
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 497 bits (1280), Expect = e-140
Identities = 246/254 (96%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 242
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVIT+GNERFRCPE+LFQPSFLGMESAGIHETT+NSIMKCD+DIRKDLYAN VLSG
Sbjct: 243 LPDGQVITVGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSG 302
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
GSTMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 363 YDESGPSIVHRKCF 376
>sp|P53478|ACT5_CHICK Actin, cytoplasmic type 5
Length = 376
Score = 497 bits (1279), Expect = e-140
Identities = 246/254 (96%), Positives = 251/254 (98%)
Frame = +2
Query: 2 IMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLA 181
IMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDLA
Sbjct: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLA 182
Query: 182 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 361
GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE
Sbjct: 183 GRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 242
Query: 362 LPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVLSG 541
LPDGQVITIGNERFRCPE++FQPSFLGMES GIHETTFNSIMKCDVDIRKDLYANTVLSG
Sbjct: 243 LPDGQVITIGNERFRCPEAIFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSG 302
Query: 542 GSTMYPGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 721
G+TMYPGIADRMQKEITALAPSTMKIKI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 303 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 362
Query: 722 YDESGPGIVHRKCF 763
YDESGP IVHRKCF
Sbjct: 363 YDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,807,281
Number of Sequences: 369166
Number of extensions: 2246773
Number of successful extensions: 6145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5982
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)