Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C09
(482 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8XCU6|YGGU_ECO57 Hypothetical UPF0235 protein yggU 35 0.12
sp|P52060|YGGU_ECOLI Hypothetical UPF0235 protein yggU 34 0.15
sp|Q83JS1|YGGU_SHIFL Hypothetical UPF0235 protein yggU >gi|... 34 0.15
sp|Q8KCT5|RBN_CHLTE tRNA-processing ribonuclease BN (RNase BN) 34 0.20
sp|Q8Z3U7|YGGU_SALTI Hypothetical UPF0235 protein yggU 33 0.26
sp|Q8ZM46|YGGU_SALTY Hypothetical UPF0235 protein yggU 33 0.34
sp|P55688|Y4WJ_RHISN Hypothetical 13.3 kDa protein y4wJ 33 0.45
sp|Q58422|YA16_METJA Hypothetical protein MJ1016 31 1.7
sp|P46865|KINL_LEICH Kinesin-like protein K39 30 2.2
sp|Q8RBE5|COAE_THETN Dephospho-CoA kinase (Dephosphocoenzym... 30 2.9
>sp|Q8XCU6|YGGU_ECO57 Hypothetical UPF0235 protein yggU
Length = 96
Score = 34.7 bits (78), Expect = 0.12
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = -1
Query: 305 TRQSMAGWHGDDECKEIINERVEGLVGERLPGQMGNGF-----QLVVDE-ELGRHKQESK 144
+R S+ G HGD+ I V+G L +G F Q+V+++ ELGRHKQ
Sbjct: 22 SRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQ--- 78
Query: 143 HVHTVGQRRHRPRVPALV 90
+ + ++ P V AL+
Sbjct: 79 -IKIINPQQIPPEVAALI 95
>sp|P52060|YGGU_ECOLI Hypothetical UPF0235 protein yggU
Length = 96
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = -1
Query: 305 TRQSMAGWHGDDECKEIINERVEGLVGERLPGQMGNGF-----QLVVDE-ELGRHKQESK 144
+R S+ G HGD+ I V+G L +G F Q+V+++ ELGRHKQ
Sbjct: 22 SRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQ--- 78
Query: 143 HVHTVGQRRHRPRVPALV 90
+ + ++ P + AL+
Sbjct: 79 -IKIINPQQIPPEIAALI 95
>sp|Q83JS1|YGGU_SHIFL Hypothetical UPF0235 protein yggU
sp|Q8FE28|YGGU_ECOL6 Hypothetical UPF0235 protein yggU
Length = 96
Score = 34.3 bits (77), Expect = 0.15
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Frame = -1
Query: 305 TRQSMAGWHGDDECKEIINERVEGLVGERLPGQMGNGF-----QLVVDE-ELGRHKQESK 144
+R S+ G HGD+ I V+G L +G F Q+V+++ ELGRHKQ
Sbjct: 22 SRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQ--- 78
Query: 143 HVHTVGQRRHRPRVPALV 90
+ + ++ P + AL+
Sbjct: 79 -IKIINPQQIPPEIAALI 95
>sp|Q8KCT5|RBN_CHLTE tRNA-processing ribonuclease BN (RNase BN)
Length = 422
Score = 33.9 bits (76), Expect = 0.20
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Frame = +3
Query: 24 YLLWLVAP--------LCAGGAAYSLLYQPHKSWYSWTVTTLANGVYVFGFLFMTPQLF 176
+LL+++ P AGG ++L++ K W+++ V++ A +++G L + P LF
Sbjct: 198 FLLYMLVPNRKVRFTHALAGGVLAAVLFELAKRWFTFYVSSFATFEHIYGALSVVPMLF 256
>sp|Q8Z3U7|YGGU_SALTI Hypothetical UPF0235 protein yggU
Length = 96
Score = 33.5 bits (75), Expect = 0.26
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -1
Query: 305 TRQSMAGWHGDDECKEIINERVEGLVGERLPGQMGNGF-----QLVVDE-ELGRHKQESK 144
+R S+ G HGD+ I V+G L +G F Q+V+++ ELGRHKQ
Sbjct: 22 SRDSIVGLHGDEVKVAITAPPVDGQANSHLTKFLGKQFRVAKSQIVIEKGELGRHKQ--- 78
Query: 143 HVHTVGQRRHRPRVPAL 93
V + ++ P + AL
Sbjct: 79 -VKIIHPQQIPPEIAAL 94
>sp|Q8ZM46|YGGU_SALTY Hypothetical UPF0235 protein yggU
Length = 96
Score = 33.1 bits (74), Expect = 0.34
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Frame = -1
Query: 305 TRQSMAGWHGDDECKEIINERVEGLVGERLPGQMGNGF-----QLVVDE-ELGRHKQESK 144
+R S+ G HGD+ I V+G L +G F Q+V+++ ELGRHKQ
Sbjct: 22 SRDSIVGLHGDEVKIAITAPPVDGQANSHLTKFLGKQFRVAKSQIVIEKGELGRHKQ--- 78
Query: 143 HVHTVGQRRHRPRVPAL 93
V + ++ P + AL
Sbjct: 79 -VKIIHPQQIPPEIAAL 94
>sp|P55688|Y4WJ_RHISN Hypothetical 13.3 kDa protein y4wJ
Length = 125
Score = 32.7 bits (73), Expect = 0.45
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Frame = -1
Query: 197 GFQLVVDEELG------RHKQESKHVHTVGQRRHRPRVPALVRLVQQRVRSAPGTQGRHQ 36
G+ + +DE R K K + + + RVPAL RLVQ +P T G +
Sbjct: 40 GYNITLDEVQNYIRLDSRRKSTGKKLEAMANSKRGSRVPALPRLVQSSALDSPVTDGLTR 99
Query: 35 PQQV 24
P +
Sbjct: 100 PLHI 103
>sp|Q58422|YA16_METJA Hypothetical protein MJ1016
Length = 294
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 315 DIVFVIYIYQRWLYPVDKSRVNEFGQTFDAPA-----QDQSDKKTK 437
+I ++I+ Y RW + V K V + + FD P D+ K+TK
Sbjct: 60 NIEYLIHFYHRWSWDVSKKMVEKLSKKFDIPVIFYNITDELLKRTK 105
>sp|P46865|KINL_LEICH Kinesin-like protein K39
Length = 955
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1
Query: 260 EIINERVEGLVGERLPGQMGNGFQLVVDEELGRHKQESKHVHTVGQR 120
E+ NERV L+G+R G G G ++ VD + S+ V GQR
Sbjct: 178 EVYNERVSDLLGKRKKGVKGGGEEVYVDV----REHPSRGVFLEGQR 220
>sp|Q8RBE5|COAE_THETN Dephospho-CoA kinase (Dephosphocoenzyme A kinase)
Length = 201
Score = 30.0 bits (66), Expect = 2.9
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 410 RRSIERLSELVHPRLIDRIKPALVNVDHKHNIV 312
+ ++RL+E+ HP++ID+IK + K ++
Sbjct: 77 KEKLKRLNEITHPKIIDKIKKMIEEEKDKDKVI 109
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,991,869
Number of Sequences: 369166
Number of extensions: 1207743
Number of successful extensions: 4040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)