Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C07
(662 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa ... 406 e-113
sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa ... 403 e-112
sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa ... 402 e-112
sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa ... 402 e-112
sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa ... 380 e-105
sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa ... 364 e-100
sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase chain F (N... 333 2e-91
sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase chain F (N... 329 3e-90
sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (N... 327 2e-89
sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 (N... 323 3e-88
>sp|P25708|NUBM_BOVIN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 406 bits (1043), Expect = e-113
Identities = 188/220 (85%), Positives = 205/220 (93%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DEGEPGTCKDREI+RHDPH LVEGCL+ G+AMGA AAYIYIRGEFYNEASN+QVAI EAY
Sbjct: 118 DEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAY 177
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
+AG IGKNACG+G+DFD+F+ RGAGAYICGEETALIESIEGKQGKPRLKPPFPAD+G+FG
Sbjct: 178 EAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFG 237
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTTV+NVETVAV+PTICRRGG WFA FGRERN GTKLFNISGHVNNPCTVEE MS PLK
Sbjct: 238 CPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLK 297
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+VC++VLM
Sbjct: 298 ELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 337
>sp|Q8HXQ9|NUBM_MACFA NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 403 bits (1036), Expect = e-112
Identities = 187/220 (85%), Positives = 205/220 (93%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DEGEPGTCKDREI+RHDPH LVEGCL+ G+AMGA AAYIYIRGEFYNEASN+QVAI EAY
Sbjct: 118 DEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAY 177
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
+AG IGKNACG+G+DFD+F+ RGAGAYICGEETALIESIEGKQGKPRLKPPFPAD+G+FG
Sbjct: 178 EAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFG 237
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTTV+NVETVAV+PTICRRGG WFA FGRERN GTKLFNISGHVN+PCTVEE MS PLK
Sbjct: 238 CPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLK 297
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+VC++VLM
Sbjct: 298 ELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 337
>sp|P49821|NUBM_HUMAN NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 402 bits (1034), Expect = e-112
Identities = 186/220 (84%), Positives = 205/220 (93%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DEGEPGTCKDREI+RHDPH L+EGCL+ G+AMGA AAYIYIRGEFYNEASN+QVAI EAY
Sbjct: 118 DEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAY 177
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
+AG IGKNACG+G+DFD+F+ RGAGAYICGEETALIESIEGKQGKPRLKPPFPAD+G+FG
Sbjct: 178 EAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFG 237
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTTV+NVETVAV+PTICRRGG WFA FGRERN GTKLFNISGHVN+PCTVEE MS PLK
Sbjct: 238 CPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLK 297
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+VC++VLM
Sbjct: 298 ELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 337
>sp|Q91YT0|NUBM_MOUSE NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD) (NADH dehydrogenase
flavoprotein 1)
Length = 464
Score = 402 bits (1033), Expect = e-112
Identities = 187/220 (85%), Positives = 204/220 (92%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DEGEPGTCKDREIMRHDPH LVEGCL+ G+AMGA AAYIYIRGEFYNEASN+QVAI EAY
Sbjct: 118 DEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAY 177
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
+AG IGKNACG+ +DFD+F+ RGAGAYICGEETALIESIEGKQGKPRLKPPFPAD+G+FG
Sbjct: 178 EAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFG 237
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTTV+NVETVAV+PTICRRGG WFA FGRERN GTKLFNISGHVN+PCTVEE MS PLK
Sbjct: 238 CPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLK 297
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LIEKH G+ GGWDNLLAVIPGGSSTPLIPK+VC++VLM
Sbjct: 298 ELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLM 337
>sp|P24917|NUBM_NEUCR NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 493
Score = 380 bits (977), Expect = e-105
Identities = 173/220 (78%), Positives = 198/220 (90%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DEGEPGTCKDREIMR DPH LVEGCL+AG+AM A AAYIYIRGEF EA+ +Q AINEAY
Sbjct: 130 DEGEPGTCKDREIMRKDPHKLVEGCLVAGRAMNATAAYIYIRGEFIQEAAILQNAINEAY 189
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
G IGKNACG+G+DFD+++HRGAGAY+CGEET+LIES+EGK GKPRLKPPFPA +GLFG
Sbjct: 190 ADGLIGKNACGSGYDFDVYLHRGAGAYVCGEETSLIESLEGKPGKPRLKPPFPAAVGLFG 249
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CP+TV+NVETVAVAPTICRRGG WFA FGRERN+GTKLF ISGHVNNPCTVEE MS P++
Sbjct: 250 CPSTVANVETVAVAPTICRRGGNWFAGFGRERNQGTKLFCISGHVNNPCTVEEEMSIPMR 309
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LI+KHC G+ GGWDNLLAVIPGGSSTP++PK++CD+ LM
Sbjct: 310 ELIDKHCGGVRGGWDNLLAVIPGGSSTPILPKHICDTQLM 349
>sp|Q92406|NUBM_ASPNG NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial
precursor (Complex I-51KD) (CI-51KD)
Length = 496
Score = 364 bits (935), Expect = e-100
Identities = 166/220 (75%), Positives = 191/220 (86%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DEGEPGTCKDREIMR DP L+EGCL+ G+AM A AAY+YIRGEFY EA+ +Q AINEAY
Sbjct: 132 DEGEPGTCKDREIMRKDPQKLIEGCLVVGRAMNANAAYMYIRGEFYQEATVLQRAINEAY 191
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
+AG IGKNACGTG+DFD+++HRG GAY+CGEET+LIESIEGK GKPRLKPPFPA +GLFG
Sbjct: 192 EAGLIGKNACGTGYDFDVYIHRGMGAYVCGEETSLIESIEGKAGKPRLKPPFPAAVGLFG 251
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CP+TV+NVETVAV PTI RRG WF+ FGRERN GTKLF ISGHVNNPCTVEE MS L+
Sbjct: 252 CPSTVTNVETVAVTPTIMRRGASWFSSFGRERNAGTKLFCISGHVNNPCTVEEEMSISLR 311
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
+I++HC G+ GGWDNLLAVIPGGSSTP++PK +CD LM
Sbjct: 312 DVIDRHCGGVRGGWDNLLAVIPGGSSTPVLPKTICDDQLM 351
>sp|Q9ZE33|NUOF_RICPR NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 421
Score = 333 bits (855), Expect = 2e-91
Identities = 149/216 (68%), Positives = 180/216 (83%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DE EPGTCKDR+I+R +PH L+EGCLIA A+GA YIYIRGEFYNEASNMQ A++EAY
Sbjct: 84 DESEPGTCKDRDILRFEPHKLIEGCLIASFAIGANTCYIYIRGEFYNEASNMQRALDEAY 143
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
K G IGKNACG+GFD +I++HRGAGAYICGEETAL+ES+EGK+G PRLKPPFPA GL+G
Sbjct: 144 KEGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYG 203
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTT++NVE++AV PTI RRG WFA G+ N GTK+F ISGHVN PC +EE M PLK
Sbjct: 204 CPTTINNVESIAVVPTILRRGASWFAAIGKPNNTGTKVFCISGHVNKPCNIEEVMGVPLK 263
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCD 649
LIEK+ G+ GGW+NL A+IPGG+S PL+PK++C+
Sbjct: 264 ELIEKYAGGVRGGWNNLKAIIPGGASVPLLPKSLCE 299
>sp|Q92JB2|NUOF_RICCN NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 421
Score = 329 bits (844), Expect = 3e-90
Identities = 148/216 (68%), Positives = 179/216 (82%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DE EPGTCKDR+I+R +PH L+EGCL+A A+GA YIYIRGEFYNEASN+Q A++EAY
Sbjct: 84 DESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANNCYIYIRGEFYNEASNIQRALDEAY 143
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
K G IGKN+CG+GFD +I++HRGAGAYICGEETAL+ES+EGK+G PRLKPPFPA GL+G
Sbjct: 144 KEGLIGKNSCGSGFDCNIYLHRGAGAYICGEETALLESLEGKKGMPRLKPPFPAGFGLYG 203
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTT++NVE++AV PTI RRG WFA G+ N GTK+F ISGHVN PC VEE M LK
Sbjct: 204 CPTTINNVESIAVVPTILRRGASWFAGIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLK 263
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCD 649
LIEK+ G+ GGWDNL A+IPGGSS PL+PK++C+
Sbjct: 264 ELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE 299
>sp|O07948|NUOF_RHOCA NADH-quinone oxidoreductase chain F (NADH dehydrogenase I, chain F)
(NDH-1, chain F)
Length = 431
Score = 327 bits (838), Expect = 2e-89
Identities = 150/220 (68%), Positives = 177/220 (80%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DE EPGTCKDREIMRHDPHTL+EG LIAG AMGA AAYIYIRGE+ E +Q AI+E Y
Sbjct: 85 DESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARAAYIYIRGEYVREKEALQAAIDECY 144
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
+AG IGKNAC + +DFD+++H GAGAYICGEETAL+ES+EGK+G PR+KPPFPA GL+G
Sbjct: 145 EAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGSGLYG 204
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTTV+NVE++AV PTI RRGG WFA GR N G KLF +SGHVN PC VEE MS +K
Sbjct: 205 CPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGVKLFAMSGHVNTPCVVEEAMSISMK 264
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LIEKH G+ GGW NL AVIPGG+S P+IP ++C+ +M
Sbjct: 265 ELIEKHGGGVRGGWKNLKAVIPGGASCPVIPAHLCEDAIM 304
>sp|P29913|NQO1_PARDE NADH-quinone oxidoreductase chain 1 (NADH dehydrogenase I, chain 1)
(NDH-1, chain 1)
Length = 431
Score = 323 bits (827), Expect = 3e-88
Identities = 147/220 (66%), Positives = 175/220 (79%)
Frame = +2
Query: 2 DEGEPGTCKDREIMRHDPHTLVEGCLIAGKAMGAVAAYIYIRGEFYNEASNMQVAINEAY 181
DE EP TCKDREIMRHDPHTL+EG LIA AMGA AAYIYIRGEF E +Q AI+E Y
Sbjct: 85 DESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECY 144
Query: 182 KAGFIGKNACGTGFDFDIFMHRGAGAYICGEETALIESIEGKQGKPRLKPPFPADIGLFG 361
AG +G+NA G+G+DFD+++H GAGAYICGEETAL+ES+EGK+G PR+KPPFPA GL+G
Sbjct: 145 DAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYG 204
Query: 362 CPTTVSNVETVAVAPTICRRGGEWFAQFGRERNKGTKLFNISGHVNNPCTVEETMSTPLK 541
CPTTV+NVE++AV PTI RRG EWFA FGR N G KLF ++GHVN PC VEE MS P++
Sbjct: 205 CPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGVKLFGLTGHVNTPCVVEEAMSIPMR 264
Query: 542 ALIEKHCHGIIGGWDNLLAVIPGGSSTPLIPKNVCDSVLM 661
LIEKH GI GGW NL AVIPGG+S P++ C++ +M
Sbjct: 265 ELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCENAIM 304
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,522,863
Number of Sequences: 369166
Number of extensions: 1803842
Number of successful extensions: 4831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4822
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)