Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C01
(364 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37167|ACTP_ACACA Actophorin 53 2e-07
sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) ... 50 2e-06
sp|Q9LQ81|ADFX_ARATH Actin-depolymerizing factor like At1g0... 50 2e-06
sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform... 49 5e-06
sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform) 49 5e-06
sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform) 48 6e-06
sp|P10668|COF1_PIG Cofilin-1 (Cofilin, non-muscle isoform) ... 48 8e-06
sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (A... 47 1e-05
sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform) 47 1e-05
sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform) 47 1e-05
>sp|P37167|ACTP_ACACA Actophorin
Length = 138
Score = 53.1 bits (126), Expect = 2e-07
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Frame = +2
Query: 8 YEKFKQHIIETYAQEGCYALYDYE--------GTLAFISWIPETMKINSRMIMAASKSEI 163
YE FK + E + YA++DYE + FI W P++ I S+M+ ++K I
Sbjct: 49 YEDFKSQLPERDCR---YAIFDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSI 105
Query: 164 ATRMVGVKAKIEANSEDEIDESVIKEKTASKV 259
++VG++ +++A EI E + E+ V
Sbjct: 106 KKKLVGIQVEVQATDAAEISEDAVSERAKKDV 137
>sp|P18359|DEST_CHICK Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 50.1 bits (118), Expect = 2e-06
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Frame = +2
Query: 23 QHIIETYAQEGC-YALYDY--------EGTLAFISWIPETMKINSRMIMAASKSEIATRM 175
+H +E ++ C YALYD + L F W PE + S+MI A+SK I +
Sbjct: 69 KHFVEMLPEKDCRYALYDASFETKESKKEELMFFLWAPEQAPLKSKMIYASSKDAIKKKF 128
Query: 176 VGVKAKIEANSEDEIDESVIKEK 244
G+K + +AN ++++ + I EK
Sbjct: 129 QGIKHECQANGPEDLNRACIAEK 151
>sp|Q9LQ81|ADFX_ARATH Actin-depolymerizing factor like At1g01750 (ADF-like)
Length = 140
Score = 49.7 bits (117), Expect = 2e-06
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Frame = +2
Query: 8 YEKFKQHIIETYAQEGCYALYDYEGT---------LAFISWIPETMKINSRMIMAASKSE 160
YE F + I E E YA+YDY+ T + FI+W P+T ++ S+M+ A+SK
Sbjct: 53 YEDFTRSIPE---DECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDR 109
Query: 161 IATRMVGVKAKIEANSEDEIDESVIK 238
+ G++ +++A E+ +IK
Sbjct: 110 FKRELDGIQVELQATDPSEMSLDIIK 135
>sp|P23528|COF1_HUMAN Cofilin-1 (Cofilin, non-muscle isoform) (18 kDa phosphoprotein)
(p18)
Length = 166
Score = 48.5 bits (114), Expect = 5e-06
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +2
Query: 5 PYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIMAASKS 157
PY F ++ + C YALYD YE L FI W PE+ + S+MI A+SK
Sbjct: 67 PYATF----VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKD 122
Query: 158 EIATRMVGVKAKIEANSEDEI-DESVIKEK 244
I ++ G+K +++AN +E+ D + EK
Sbjct: 123 AIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P45592|COF1_RAT Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 48.5 bits (114), Expect = 5e-06
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Frame = +2
Query: 5 PYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIMAASKS 157
PY F ++ + C YALYD YE L FI W PE+ + S+MI A+SK
Sbjct: 67 PYTTF----VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKD 122
Query: 158 EIATRMVGVKAKIEANSEDEI-DESVIKEK 244
I ++ G+K +++AN +E+ D + EK
Sbjct: 123 AIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P18760|COF1_MOUSE Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 48.1 bits (113), Expect = 6e-06
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Frame = +2
Query: 5 PYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIMAASKS 157
PY F ++ + C YALYD YE L FI W PE + S+MI A+SK
Sbjct: 67 PYTTF----VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPENAPLKSKMIYASSKD 122
Query: 158 EIATRMVGVKAKIEANSEDEI-DESVIKEK 244
I ++ G+K +++AN +E+ D + EK
Sbjct: 123 AIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P10668|COF1_PIG Cofilin-1 (Cofilin, non-muscle isoform)
sp|Q6B7M7|COF1_SHEEP Cofilin-1 (Cofilin, non-muscle isoform)
Length = 166
Score = 47.8 bits (112), Expect = 8e-06
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Frame = +2
Query: 5 PYEKFKQHIIETYAQEGC-YALYD--YEGT------LAFISWIPETMKINSRMIMAASKS 157
PY F ++ + C YALYD YE L FI W PE + S+MI A+SK
Sbjct: 67 PYATF----VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPECAPLKSKMIYASSKD 122
Query: 158 EIATRMVGVKAKIEANSEDEI-DESVIKEK 244
I ++ G+K +++AN +E+ D + EK
Sbjct: 123 AIKKKLTGIKHELQANCYEEVKDRCTLAEK 152
>sp|P60982|DEST_PIG Destrin (Actin-depolymerizing factor) (ADF)
sp|P60981|DEST_HUMAN Destrin (Actin-depolymerizing factor) (ADF)
Length = 165
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Frame = +2
Query: 23 QHIIETYAQEGC-YALYDY--------EGTLAFISWIPETMKINSRMIMAASKSEIATRM 175
+H + ++ C YALYD + L F W PE + S+MI A+SK I +
Sbjct: 69 KHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKF 128
Query: 176 VGVKAKIEANSEDEIDESVIKEK 244
G+K + +AN ++++ + I EK
Sbjct: 129 QGIKHECQANGPEDLNRACIAEK 151
>sp|Q9Y281|COF2_HUMAN Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 47.4 bits (111), Expect = 1e-05
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Frame = +2
Query: 59 YALYD--YEGT------LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSED 214
YALYD YE L FI W PE+ + S+MI A+SK I + G+K + + N D
Sbjct: 82 YALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLD 141
Query: 215 EI-DESVIKEKTASKV 259
+I D S + EK V
Sbjct: 142 DIKDRSTLGEKLGGNV 157
>sp|P45591|COF2_MOUSE Cofilin-2 (Cofilin, muscle isoform)
Length = 166
Score = 47.4 bits (111), Expect = 1e-05
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Frame = +2
Query: 59 YALYD--YEGT------LAFISWIPETMKINSRMIMAASKSEIATRMVGVKAKIEANSED 214
YALYD YE L FI W PE+ + S+MI A+SK I + G+K + + N D
Sbjct: 82 YALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLD 141
Query: 215 EI-DESVIKEKTASKV 259
+I D S + EK V
Sbjct: 142 DIKDRSTLGEKLGGSV 157
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,895,077
Number of Sequences: 369166
Number of extensions: 505062
Number of successful extensions: 1298
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1725340155
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)