Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A23
(834 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70) 65 2e-10
sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60) 65 2e-10
sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) 50 6e-06
sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (I... 47 5e-05
sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A) 45 2e-04
sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (I... 45 2e-04
sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (I... 45 3e-04
sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (I... 45 3e-04
sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (I... 44 4e-04
sp|P31732|OV71_ONCVO Muscle cell intermediate filament prot... 44 4e-04
>sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70)
Length = 615
Score = 65.5 bits (158), Expect = 2e-10
Identities = 39/93 (41%), Positives = 51/93 (54%)
Frame = +3
Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182
+KS + +R+R+ADLE +NA+ E + EEK R ELE ++E++T
Sbjct: 357 LKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMES 416
Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESRV 281
KL LELEIAAY KLLE EESRV
Sbjct: 417 ILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
>sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60)
Length = 511
Score = 65.5 bits (158), Expect = 2e-10
Identities = 39/93 (41%), Positives = 51/93 (54%)
Frame = +3
Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182
+KS + +R+R+ADLE +NA+ E + EEK R ELE ++E++T
Sbjct: 357 LKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMES 416
Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESRV 281
KL LELEIAAY KLLE EESRV
Sbjct: 417 ILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B)
Length = 589
Score = 50.4 bits (119), Expect = 6e-06
Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +3
Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797
S + F+R+ KGN++I+E D NG FITLEN + K E + LKR +D + + IV+TI
Sbjct: 465 STKTTFQRSAKGNVTISECDPNGKFITLENTHRSKDENLGEHRLKRKLDNRRE-IVYTIP 523
Query: 798 NKTTLNA 818
T L A
Sbjct: 524 PNTVLKA 530
Score = 38.1 bits (87), Expect = 0.030
Identities = 27/93 (29%), Positives = 38/93 (40%)
Frame = +3
Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182
++ I +R ++ DLE +NA E + + + QR E L L
Sbjct: 341 MRDNIGDLRGKLGDLEAKNALLEKEVQNLNYQLNDDQRQYEAALNDRDATLRRMREECQT 400
Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESRV 281
K L+ EIA Y K+LE EESRV
Sbjct: 401 LVAELQALLDTKQMLDAEIAIYRKMLEGEESRV 433
>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (Intermediate filament protein
A4) (IF-A4) (Cel IF A4)
Length = 575
Score = 47.4 bits (111), Expect = 5e-05
Identities = 26/61 (42%), Positives = 38/61 (62%)
Frame = +3
Query: 636 FRRTTKGNISIAETDINGLFITLENIGQKFETITGMTLKRNIDGQADIIVFTIQNKTTLN 815
+ R+ KGNI+I E + +G +I LENI ++ E I L+R I G+ + IVFT + TL
Sbjct: 460 YSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWKLRRKIAGKRE-IVFTFpreFTLR 518
Query: 816 A 818
A
Sbjct: 519 A 519
>sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A)
Length = 497
Score = 45.4 bits (106), Expect = 2e-04
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADII 782
+ R F+R+ KGN+SI ET +G ++ LEN + K E I LKR IDG+ +I+
Sbjct: 374 ASRTSFQRSAKGNVSIQETAPDGRYVVLENTHRSKEEAIGEWKLKRKIDGKREIV 428
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (Intermediate filament protein
A2) (IF-A2) (Cel IF A2)
Length = 581
Score = 45.1 bits (105), Expect = 2e-04
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +3
Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797
S R ++R+ KGN++I ET G F+ LEN + K E + LKR IDG+ + IVFT
Sbjct: 456 SSRTSYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDGKRE-IVFTFP 514
Query: 798 NKTTLN 815
+ L+
Sbjct: 515 SDYILH 520
Score = 30.8 bits (68), Expect = 4.8
Identities = 20/87 (22%), Positives = 36/87 (41%)
Frame = +3
Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182
+++Q +R +++DLE +N E + + E+ QRS E L Q+
Sbjct: 332 LRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQA 391
Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLE 263
K L+ E+ Y ++LE
Sbjct: 392 LMVELQMLLDTKQTLDGELKVYRQMLE 418
>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (Intermediate filament protein
B1) (IF-B1) (Cel IF B1)
Length = 589
Score = 44.7 bits (104), Expect = 3e-04
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +3
Query: 585 NELSSQEAGAYQSKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNI 761
N S++ S + F+R+ KGN++I+E D NG FI LEN + K E + ++R +
Sbjct: 453 NTDSTRSVRGEVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKIRRKL 512
Query: 762 DGQADII 782
DG+ +I+
Sbjct: 513 DGRREIV 519
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein
A1) (IF-A1) (Cel IF A1)
Length = 575
Score = 44.7 bits (104), Expect = 3e-04
Identities = 27/92 (29%), Positives = 43/92 (46%)
Frame = +3
Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182
+++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+
Sbjct: 330 LRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQA 389
Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESR 278
K L+ EIA Y K+LE EE+R
Sbjct: 390 LMVELQMLLDTKQTLDAEIAIYRKMLEGEENR 421
Score = 43.1 bits (100), Expect = 0.001
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +3
Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797
+ R F+R+ KGN+SI E +G FI L+N + K E I LKR IDG+ + V+T+
Sbjct: 454 ASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRE-NVYTLP 512
Query: 798 NKTTLNA 818
L A
Sbjct: 513 RDFVLRA 519
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (Intermediate filament protein
A3) (IF-A3) (Cel IF A3)
Length = 581
Score = 44.3 bits (103), Expect = 4e-04
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797
S R ++R+ KGN+SI E G F+ LEN + K E + LKR IDG+ + IVFT
Sbjct: 456 SSRTSYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDGKRE-IVFTFP 514
Query: 798 NKTTLN 815
+ L+
Sbjct: 515 SDYILH 520
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71
Length = 432
Score = 44.3 bits (103), Expect = 4e-04
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADII 782
+ R F+R+ KGN+SI + +G FI LEN + K E I LKR IDG+ +I+
Sbjct: 309 ASRTSFQRSAKGNVSIQDASSDGKFILLENTHRSKEEPIGEWRLKRKIDGKREIV 363
Score = 42.4 bits (98), Expect = 0.002
Identities = 27/92 (29%), Positives = 42/92 (45%)
Frame = +3
Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182
++ Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+
Sbjct: 185 LRVQLSDLRGKLADLEGRNSLLEKQMQELNYQLEDDQRSYEAALNDRDAQIRKMREECQA 244
Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESR 278
K L+ EIA Y K+LE EE+R
Sbjct: 245 LMMELQMLLDTKQTLDAEIAIYRKMLEGEENR 276
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,273,375
Number of Sequences: 369166
Number of extensions: 715041
Number of successful extensions: 2407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)