Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_007_A23 (834 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70) 65 2e-10 sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60) 65 2e-10 sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) 50 6e-06 sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (I... 47 5e-05 sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A) 45 2e-04 sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (I... 45 2e-04 sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (I... 45 3e-04 sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (I... 45 3e-04 sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (I... 44 4e-04 sp|P31732|OV71_ONCVO Muscle cell intermediate filament prot... 44 4e-04
>sp|Q01241|NF70_LOLPE 70 kDa neurofilament protein (NF70) Length = 615 Score = 65.5 bits (158), Expect = 2e-10 Identities = 39/93 (41%), Positives = 51/93 (54%) Frame = +3 Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182 +KS + +R+R+ADLE +NA+ E + EEK R ELE ++E++T Sbjct: 357 LKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMES 416 Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESRV 281 KL LELEIAAY KLLE EESRV Sbjct: 417 ILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
>sp|Q01240|NF60_LOLPE 60 kDa neurofilament protein (NF60) Length = 511 Score = 65.5 bits (158), Expect = 2e-10 Identities = 39/93 (41%), Positives = 51/93 (54%) Frame = +3 Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182 +KS + +R+R+ADLE +NA+ E + EEK R ELE ++E++T Sbjct: 357 LKSNMTEIRNRLADLEARNAQLERTNQDLLRDLEEKDRQNELESCQYKEEITKLRGEMES 416 Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESRV 281 KL LELEIAAY KLLE EESRV Sbjct: 417 ILKELQDLMDIKLSLELEIAAYRKLLEGEESRV 449
>sp|P23731|IFEB_ASCSU Intermediate filament protein B (IF-B) Length = 589 Score = 50.4 bits (119), Expect = 6e-06 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%) Frame = +3 Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797 S + F+R+ KGN++I+E D NG FITLEN + K E + LKR +D + + IV+TI Sbjct: 465 STKTTFQRSAKGNVTISECDPNGKFITLENTHRSKDENLGEHRLKRKLDNRRE-IVYTIP 523 Query: 798 NKTTLNA 818 T L A Sbjct: 524 PNTVLKA 530
Score = 38.1 bits (87), Expect = 0.030 Identities = 27/93 (29%), Positives = 38/93 (40%) Frame = +3 Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182 ++ I +R ++ DLE +NA E + + + QR E L L Sbjct: 341 MRDNIGDLRGKLGDLEAKNALLEKEVQNLNYQLNDDQRQYEAALNDRDATLRRMREECQT 400 Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESRV 281 K L+ EIA Y K+LE EESRV Sbjct: 401 LVAELQALLDTKQMLDAEIAIYRKMLEGEESRV 433
>sp|P90900|IFA4_CAEEL Intermediate filament protein ifa-4 (Intermediate filament protein A4) (IF-A4) (Cel IF A4) Length = 575 Score = 47.4 bits (111), Expect = 5e-05 Identities = 26/61 (42%), Positives = 38/61 (62%) Frame = +3 Query: 636 FRRTTKGNISIAETDINGLFITLENIGQKFETITGMTLKRNIDGQADIIVFTIQNKTTLN 815 + R+ KGNI+I E + +G +I LENI ++ E I L+R I G+ + IVFT + TL Sbjct: 460 YSRSAKGNIAIQEAEPSGKYIVLENISRRDENIGDWKLRRKIAGKRE-IVFTFpreFTLR 518 Query: 816 A 818 A Sbjct: 519 A 519
>sp|P23730|IFEA_ASCSU Intermediate filament protein A (IF-A) Length = 497 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Frame = +3 Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADII 782 + R F+R+ KGN+SI ET +G ++ LEN + K E I LKR IDG+ +I+ Sbjct: 374 ASRTSFQRSAKGNVSIQETAPDGRYVVLENTHRSKEEAIGEWKLKRKIDGKREIV 428
>sp|O02365|IFA2_CAEEL Intermediate filament protein ifa-2 (Intermediate filament protein A2) (IF-A2) (Cel IF A2) Length = 581 Score = 45.1 bits (105), Expect = 2e-04 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 1/66 (1%) Frame = +3 Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797 S R ++R+ KGN++I ET G F+ LEN + K E + LKR IDG+ + IVFT Sbjct: 456 SSRTSYQRSAKGNVAIKETSPEGKFVILENTHRAKEEPLGDWKLKRKIDGKRE-IVFTFP 514 Query: 798 NKTTLN 815 + L+ Sbjct: 515 SDYILH 520
Score = 30.8 bits (68), Expect = 4.8 Identities = 20/87 (22%), Positives = 36/87 (41%) Frame = +3 Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182 +++Q +R +++DLE +N E + + E+ QRS E L Q+ Sbjct: 332 LRNQTSELRQKLSDLESRNLLLEKQIEDLNYQLEDDQRSYEAALNDKDAQIRKLREECQA 391 Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLE 263 K L+ E+ Y ++LE Sbjct: 392 LMVELQMLLDTKQTLDGELKVYRQMLE 418
>sp|Q19289|IFB1_CAEEL Intermediate filament protein ifb-1 (Intermediate filament protein B1) (IF-B1) (Cel IF B1) Length = 589 Score = 44.7 bits (104), Expect = 3e-04 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = +3 Query: 585 NELSSQEAGAYQSKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNI 761 N S++ S + F+R+ KGN++I+E D NG FI LEN + K E + ++R + Sbjct: 453 NTDSTRSVRGEVSTKTTFQRSAKGNVTISECDPNGKFIKLENSHRNKDENVGEHKIRRKL 512 Query: 762 DGQADII 782 DG+ +I+ Sbjct: 513 DGRREIV 519
>sp|P90901|IFA1_CAEEL Intermediate filament protein ifa-1 (Intermediate filament protein A1) (IF-A1) (Cel IF A1) Length = 575 Score = 44.7 bits (104), Expect = 3e-04 Identities = 27/92 (29%), Positives = 43/92 (46%) Frame = +3 Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182 +++Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ Sbjct: 330 LRTQLSDLRGKLADLESRNSLLEKQIQELNYQLEDDQRSYEAALNDRDSQIRKMREECQA 389 Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESR 278 K L+ EIA Y K+LE EE+R Sbjct: 390 LMVELQMLLDTKQTLDAEIAIYRKMLEGEENR 421
Score = 43.1 bits (100), Expect = 0.001 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +3 Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797 + R F+R+ KGN+SI E +G FI L+N + K E I LKR IDG+ + V+T+ Sbjct: 454 ASRQSFQRSAKGNVSIHEASPDGKFIVLQNTHRAKDEAIGEWKLKRRIDGKRE-NVYTLP 512 Query: 798 NKTTLNA 818 L A Sbjct: 513 RDFVLRA 519
>sp|Q21065|IFA3_CAEEL Intermediate filament protein ifa-3 (Intermediate filament protein A3) (IF-A3) (Cel IF A3) Length = 581 Score = 44.3 bits (103), Expect = 4e-04 Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +3 Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADIIVFTIQ 797 S R ++R+ KGN+SI E G F+ LEN + K E + LKR IDG+ + IVFT Sbjct: 456 SSRTSYQRSAKGNVSIKEVSPEGKFVILENTHRDKEEPLGDWKLKRKIDGKRE-IVFTFP 514 Query: 798 NKTTLN 815 + L+ Sbjct: 515 SDYILH 520
>sp|P31732|OV71_ONCVO Muscle cell intermediate filament protein OV71 Length = 432 Score = 44.3 bits (103), Expect = 4e-04 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = +3 Query: 621 SKRMKFRRTTKGNISIAETDINGLFITLENIGQ-KFETITGMTLKRNIDGQADII 782 + R F+R+ KGN+SI + +G FI LEN + K E I LKR IDG+ +I+ Sbjct: 309 ASRTSFQRSAKGNVSIQDASSDGKFILLENTHRSKEEPIGEWRLKRKIDGKREIV 363
Score = 42.4 bits (98), Expect = 0.002 Identities = 27/92 (29%), Positives = 42/92 (45%) Frame = +3 Query: 3 IKSQIQSMRSRIADLEMQNAEYEHNLNMIRGSYEEKQRSLELELMYFQEQLTGXXXXXXX 182 ++ Q+ +R ++ADLE +N+ E + + E+ QRS E L Q+ Sbjct: 185 LRVQLSDLRGKLADLEGRNSLLEKQMQELNYQLEDDQRSYEAALNDRDAQIRKMREECQA 244 Query: 183 XXXXXXXXXXAKLGLELEIAAYGKLLEFEESR 278 K L+ EIA Y K+LE EE+R Sbjct: 245 LMMELQMLLDTKQTLDAEIAIYRKMLEGEENR 276
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,273,375 Number of Sequences: 369166 Number of extensions: 715041 Number of successful extensions: 2407 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2394 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 8100769320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)