Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A19
(352 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23298|KPCL_MOUSE Protein kinase C, eta type (nPKC-eta) ... 35 0.053
sp|P23443|KS6B1_HUMAN Ribosomal protein S6 kinase 1 (S6K) (... 34 0.12
sp|Q64617|KPCL_RAT Protein kinase C, eta type (nPKC-eta) (P... 34 0.12
sp|P24723|KPCL_HUMAN Protein kinase C, eta type (nPKC-eta) ... 34 0.12
sp|P67998|KS6B1_RABIT Ribosomal protein S6 kinase I (S6K) (... 34 0.12
sp|Q8BSK8|KS6B1_MOUSE Ribosomal protein S6 kinase I (S6K) (... 34 0.12
sp|P67999|KS6B1_RAT Ribosomal protein S6 kinase I (S6K) (p7... 34 0.12
sp|Q7VRE3|RRF_BLOFL Ribosome recycling factor (Ribosome-rel... 31 1.0
sp|Q16974|KPC1_APLCA Calcium-dependent protein kinase C (AP... 29 3.8
sp|Q09388|ACM2_CAEEL Probable muscarinic acetylcholine rece... 28 6.5
>sp|P23298|KPCL_MOUSE Protein kinase C, eta type (nPKC-eta) (PKC-L)
Length = 683
Score = 35.0 bits (79), Expect = 0.053
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISPSTADDS---NCYWFENFSYVSPQVYL 159
+ SR+DVS FD + + E V++P N F NFSYVSP++ L
Sbjct: 635 IKSREDVSNFDPDFIKEEPVLTPIDEGHLPMINQDEFRNFSYVSPELQL 683
>sp|P23443|KS6B1_HUMAN Ribosomal protein S6 kinase 1 (S6K) (S6K1) (70 kDa ribosomal
protein S6 kinase 1) (p70 S6 kinase alpha)
(p70(S6K)-alpha) (p70-S6K) (p70-alpha)
Length = 525
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISP--STADDSNCYWFENFSYVSPQVYLEFSEQGSF 183
L S +DVS FD + V SP ST +S F F+YV+P V E+ SF
Sbjct: 373 LQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESVKEKFSF 428
>sp|Q64617|KPCL_RAT Protein kinase C, eta type (nPKC-eta) (PKC-L)
Length = 683
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISPSTADDS---NCYWFENFSYVSPQV 153
+ SR+DVS FD + + E V++P N F NFSYVSP++
Sbjct: 635 IKSREDVSNFDPDFIKEEPVLTPIDEGHLPMINQDEFRNFSYVSPEL 681
>sp|P24723|KPCL_HUMAN Protein kinase C, eta type (nPKC-eta) (PKC-L)
Length = 682
Score = 33.9 bits (76), Expect = 0.12
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISPSTADDS---NCYWFENFSYVSPQV 153
+ SR+DVS FD + + E V++P N F NFSYVSP++
Sbjct: 634 IKSREDVSNFDPDFIKEEPVLTPIDEGHLPMINQDEFRNFSYVSPEL 680
>sp|P67998|KS6B1_RABIT Ribosomal protein S6 kinase I (S6K) (p70-S6K)
Length = 525
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISP--STADDSNCYWFENFSYVSPQVYLEFSEQGSF 183
L S +DVS FD + V SP ST +S F F+YV+P V E+ SF
Sbjct: 373 LQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESVKEKFSF 428
>sp|Q8BSK8|KS6B1_MOUSE Ribosomal protein S6 kinase I (S6K) (p70-S6K)
Length = 525
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISP--STADDSNCYWFENFSYVSPQVYLEFSEQGSF 183
L S +DVS FD + V SP ST +S F F+YV+P V E+ SF
Sbjct: 373 LQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESVKEKFSF 428
>sp|P67999|KS6B1_RAT Ribosomal protein S6 kinase I (S6K) (p70-S6K)
Length = 525
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 22 LSSRDDVSLFDKNIVSEPCVISP--STADDSNCYWFENFSYVSPQVYLEFSEQGSF 183
L S +DVS FD + V SP ST +S F F+YV+P V E+ SF
Sbjct: 373 LQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESVKEKFSF 428
>sp|Q7VRE3|RRF_BLOFL Ribosome recycling factor (Ribosome-releasing factor) (RRF)
Length = 188
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +2
Query: 137 MSVHKYTSNFRNKAVSQDNEHEVEYRIQAV----LREILIIIKQRNFYLKK 277
+S K + RNK +++DNEH + IQ + +++I++I K++ L K
Sbjct: 137 VSNDKLKTFLRNKEINKDNEHYFQNEIQNLTDIWIKKIILITKEKELELMK 187
>sp|Q16974|KPC1_APLCA Calcium-dependent protein kinase C (APL I)
Length = 649
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 10 HEAELSSRDDVSLFDKNIVSEPCVISPS----TADDSNCYWFENFSYVSPQ 150
++ + SR DVS FD+ SE ++P+ + C F FSYV+P+
Sbjct: 595 YKPRIKSRKDVSNFDREFTSEAPNVTPTDKLFIMNLDQCE-FSGFSYVNPE 644
>sp|Q09388|ACM2_CAEEL Probable muscarinic acetylcholine receptor gar-2 (G-protein linked
acetylcholine receptor 2)
Length = 627
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 31 RDDVSLFDKNI--VSEPCVISPSTADDSNCYWFENFSYVSPQVYLEFSEQ 174
R+ ++L + N+ + ++ P T D N Y NFS +S Q+ FS Q
Sbjct: 271 RNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNPNFSMISEQLTNGFSRQ 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,461,613
Number of Sequences: 369166
Number of extensions: 602618
Number of successful extensions: 1475
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)