Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A10-2
(778 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99878|H2AE_HUMAN Histone H2A.e (H2A/e) 147 2e-35
sp|P02261|H2AC_HUMAN Histone H2A.c/d/i/n/p (H2A.1) (H2A/c) ... 147 2e-35
sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3) 146 5e-35
sp|P02263|H2A4_CHICK Histone H2A-IV 146 7e-35
sp|Q16777|H2AQ_HUMAN Histone H2A.q (H2A/q) (H2A-GL101) 146 7e-35
sp|P20670|H2AO_HUMAN Histone H2A.o (H2A/o) (H2A.2) (H2a-615) 146 7e-35
sp|P13912|H2A_CAIMO Histone H2A 146 7e-35
sp|P02262|H2A1_RAT Histone H2A.1 146 7e-35
sp|P22752|H2A1_MOUSE Histone H2A.1 145 1e-34
sp|P28001|H2AA_HUMAN Histone H2A.a (H2A/a) (H2A.2) 145 1e-34
>sp|Q99878|H2AE_HUMAN Histone H2A.e (H2A/e)
Length = 128
Score = 147 bits (372), Expect = 2e-35
Identities = 76/98 (77%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
KTRSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 16 KTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|P02261|H2AC_HUMAN Histone H2A.c/d/i/n/p (H2A.1) (H2A/c) (H2A/d) (H2A/i) (H2A/n)
(H2A/p) (H2A.1b)
Length = 130
Score = 147 bits (372), Expect = 2e-35
Identities = 76/98 (77%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
KTRSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 16 KTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|P20671|H2AG_HUMAN Histone H2A.g (H2A/g) (H2A.3)
Length = 130
Score = 146 bits (369), Expect = 5e-35
Identities = 75/98 (76%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
KTRSSRAGLQFPVGR+HR LRKGN++ERVGAGAP GNAARDNK
Sbjct: 16 KTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|P02263|H2A4_CHICK Histone H2A-IV
Length = 129
Score = 146 bits (368), Expect = 7e-35
Identities = 75/98 (76%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
K+RSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 16 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|Q16777|H2AQ_HUMAN Histone H2A.q (H2A/q) (H2A-GL101)
Length = 129
Score = 146 bits (368), Expect = 7e-35
Identities = 75/98 (76%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
K+RSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 16 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|P20670|H2AO_HUMAN Histone H2A.o (H2A/o) (H2A.2) (H2a-615)
Length = 130
Score = 146 bits (368), Expect = 7e-35
Identities = 75/98 (76%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
K+RSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 16 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|P13912|H2A_CAIMO Histone H2A
Length = 129
Score = 146 bits (368), Expect = 7e-35
Identities = 75/98 (76%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
K+RSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 16 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 113
>sp|P02262|H2A1_RAT Histone H2A.1
Length = 129
Score = 146 bits (368), Expect = 7e-35
Identities = 75/98 (76%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
K+RSSRAGLQFPVGR+HR LRKGN+AERVGAGAP GNAARDNK
Sbjct: 15 KSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 74
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ
Sbjct: 75 KTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 112
>sp|P22752|H2A1_MOUSE Histone H2A.1
Length = 130
Score = 145 bits (366), Expect = 1e-34
Identities = 74/98 (75%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
KTRSSRAGLQFPVGR+HR LRKGN++ERVGAGAP GNAARDNK
Sbjct: 16 KTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLG+VTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQ 113
>sp|P28001|H2AA_HUMAN Histone H2A.a (H2A/a) (H2A.2)
Length = 130
Score = 145 bits (366), Expect = 1e-34
Identities = 74/98 (75%), Positives = 79/98 (80%)
Frame = +1
Query: 1 KTRSSRAGLQFPVGRIHRKLRKGNFAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNK 180
KTRSSRAGLQFPVGR+HR LRKGN++ERVGAGAP GNAARDNK
Sbjct: 16 KTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNK 75
Query: 181 KSRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQ 294
K+RIIPRHLQLAIRNDEELNKLLG+VTIAQGGVLPNIQ
Sbjct: 76 KTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQ 113
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,010,166
Number of Sequences: 369166
Number of extensions: 1611865
Number of successful extensions: 4540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4437
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7260540000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)