Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A10-1
(114 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubi... 62 3e-10
sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubi... 62 3e-10
sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kD... 62 3e-10
sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubi... 62 3e-10
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 62 4e-10
sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubi... 62 4e-10
sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubi... 62 5e-10
sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa... 62 5e-10
sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa... 62 5e-10
sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 60 1e-09
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2)
Length = 147
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDILR QWSPALTISKV LS +L
Sbjct: 75 HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Xubc4)
Length = 147
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDILR QWSPALTISKV LS +L
Sbjct: 75 HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Effete protein)
Length = 147
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDILR QWSPALTISKV LS +L
Sbjct: 75 HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
phosphatase) (PAPase)
sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
Length = 147
Score = 62.4 bits (150), Expect = 3e-10
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDILR QWSPALTISKV LS +L
Sbjct: 75 HPNINSNGSICLDILRSQWSPALTISKVLLSICSLL 110
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 62.0 bits (149), Expect = 4e-10
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDILR QWSPALT+SKV LS +L
Sbjct: 75 HPNINSNGSICLDILRSQWSPALTVSKVLLSICSLL 110
>sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
(Ubiquitin carrier protein 4)
Length = 147
Score = 62.0 bits (149), Expect = 4e-10
Identities = 29/36 (80%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDILR QWSPALTISKV LS +L
Sbjct: 75 HPNINSNGSICLDILRDQWSPALTISKVLLSICSLL 110
>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
(Ubiquitin carrier protein D4) (Ubiquitin-conjugating
enzyme E2-17 kDa 4) (E2(17)KB 4)
Length = 147
Score = 61.6 bits (148), Expect = 5e-10
Identities = 27/31 (87%), Positives = 29/31 (93%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLS 22
HPN+N+NGSICLDILR QWSPALTISKV LS
Sbjct: 75 HPNVNSNGSICLDILRSQWSPALTISKVLLS 105
>sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 147
Score = 61.6 bits (148), Expect = 5e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLS 22
HPNIN+NGSICLDILR QWSPALTISKV LS
Sbjct: 75 HPNINSNGSICLDILRDQWSPALTISKVLLS 105
>sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Colletotrichum
hard-surface-induced protein 1)
Length = 147
Score = 61.6 bits (148), Expect = 5e-10
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLS 22
HPNIN+NGSICLDILR QWSPALTISKV LS
Sbjct: 75 HPNINSNGSICLDILRDQWSPALTISKVLLS 105
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
8) (Ubiquitin carrier protein 8) (UBCAT4A)
Length = 148
Score = 60.5 bits (145), Expect = 1e-09
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = -1
Query: 114 HPNINANGSICLDILRGQWSPALTISKVFLSFL*IL 7
HPNIN+NGSICLDIL+ QWSPALTISKV LS +L
Sbjct: 75 HPNINSNGSICLDILKEQWSPALTISKVLLSICSLL 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,182,288
Number of Sequences: 369166
Number of extensions: 115181
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 68,354,980
effective HSP length: 11
effective length of database: 66,322,895
effective search space used: 1724395270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)