Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A09
(542 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q924T7|RNF31_MOUSE RING finger protein 31 37 0.040
sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-betwe... 35 0.090
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 33 0.34
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 32 0.76
sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein (chS... 32 0.76
sp|Q9UGI0|TRABD_HUMAN TRABID protein (Zinc finger Ran-bindi... 31 1.7
sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2 31 1.7
sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast ... 31 2.2
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 30 2.9
sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral p... 30 2.9
>sp|Q924T7|RNF31_MOUSE RING finger protein 31
Length = 1066
Score = 36.6 bits (83), Expect = 0.040
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 368 TENLRRDDDGEKWICLQCTFANESANLNCIICEHAR 475
T L + ++W C CTF NE+A + C ICE R
Sbjct: 336 TGGLEPEPARDQWACQSCTFENEAAAVLCAICERPR 371
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
ubiquitin-associated domain protein)
Length = 1072
Score = 35.4 bits (80), Expect = 0.090
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 368 TENLRRDDDGEKWICLQCTFANESANLNCIICEHAR 475
T L D +W C CTF NE+A + C ICE R
Sbjct: 342 TGGLEPDLARGRWACQSCTFENEAAAVLCSICERPR 377
Score = 30.4 bits (67), Expect = 2.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 404 WICLQCTFANESANLNCIIC 463
W C+ CTF N S C++C
Sbjct: 413 WYCIHCTFCNSSPGWVCVMC 432
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 33.5 bits (75), Expect = 0.34
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 12/153 (7%)
Frame = +2
Query: 53 TFRDIKEKIWQEIGFPMNKQLIIFNNAMQPDASRLEQAACNQADDCLDGKEMFLYLLHGY 232
T +K+ ++ + GFP Q + + D L Q +G +LYLL
Sbjct: 70 TVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQ-----NGDSAYLYLLSAR 124
Query: 233 ECGKEKEIANSIGEFLFERKMKCQEALS-KSIAV-------PEPIKHFVAQRPTENLRRD 388
+ E ER+++ E L K + + P P K V Q P + D
Sbjct: 125 NTSLNPQ------ELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRG-QPD 177
Query: 389 DDGEK----WICLQCTFANESANLNCIICEHAR 475
E W C CTF N+ C +C AR
Sbjct: 178 AVPEPPPVGWQCPGCTFINKPTRPGCEMCCRAR 210
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 32.3 bits (72), Expect = 0.76
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 7/148 (4%)
Frame = +2
Query: 53 TFRDIKEKIWQEIGFPMNKQLIIFNNAMQPDASRLEQAACNQADDCLDGKEMFLYLLHG- 229
T +K+ ++ + GFP + Q + + D L + +G +LYLL
Sbjct: 70 TVASLKDMVFLDYGFPPSLQQWVVGQRLARDQETLHSHGIRR-----NGDSAYLYLLSAR 124
Query: 230 ------YECGKEKEIANSIGEFLFERKMKCQEALSKSIAVPEPIKHFVAQRPTENLRRDD 391
E +++++ + E L + + Q +P+P H +P
Sbjct: 125 NTSLNPQELQRQRQLR--MLEDLGFKDLTLQPRGPLEPVLPKPRTHQETGQPDAAPESPP 182
Query: 392 DGEKWICLQCTFANESANLNCIICEHAR 475
G W C CTF N+ C +C AR
Sbjct: 183 VG--WQCPGCTFINKPTRPGCEMCCRAR 208
>sp|Q5QJC4|DCR1A_CHICK DNA cross-link repair 1A protein (chSNM1A)
Length = 972
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = +2
Query: 257 ANSIGEFLF-------ERKMKCQEALSKSIAVPEPIKHFVAQRPTENLRRDDDGE 400
A+ GE+L ERKM C A +KS P P++ A++P++NL+ + E
Sbjct: 165 ASRAGEYLVNSTANTVERKMTCSTA-AKSSCFPSPVEDSQAEKPSKNLKNVPNNE 218
>sp|Q9UGI0|TRABD_HUMAN TRABID protein (Zinc finger Ran-binding domain containing 1)
Length = 708
Score = 31.2 bits (69), Expect = 1.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 398 EKWICLQCTFANESANLNCIICEHAR 475
+ W C CT+ N + C++C+H R
Sbjct: 151 QHWTCSVCTYENWAKAKRCVVCDHPR 176
>sp|Q8IY57|YAF2_HUMAN YY1-associated factor 2
Length = 180
Score = 31.2 bits (69), Expect = 1.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 362 RPTENLRRDDDGEKWICLQCTFANESANLNCIICE 466
RP + + D W C CTF N + C++C+
Sbjct: 9 RPKRHAKPSSDEGYWDCSVCTFRNSAEAFKCMMCD 43
>sp|Q8S9K3|VAR3_ARATH Zinc finger protein VAR3, chloroplast precursor (VARIEGATED 3
protein)
Length = 758
Score = 30.8 bits (68), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 380 RRDDDGEKWICLQCTFANESANLNCIICEHAR 475
+R G +W C QC F N N+ C+ C+ R
Sbjct: 305 KRQLTGSEWECPQCDFYNYGRNVACLRCDCKR 336
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 30.4 bits (67), Expect = 2.9
Identities = 29/144 (20%), Positives = 52/144 (36%), Gaps = 3/144 (2%)
Frame = +2
Query: 53 TFRDIKEKIWQEIGFPMNKQLIIFNNAMQPDASRLEQAACNQADDCLDGKEMFLYLLHGY 232
T +K+ ++ + GFP + Q + + D L + +G +LYLL
Sbjct: 70 TVASLKDMVFLDYGFPPSLQQWVVGQRLARDQETLHSHGIRR-----NGDGAYLYLLSAR 124
Query: 233 ECGKEKEIANSIGEFLFERKMKCQEALSKSIAVPEPI--KHFVAQRPTE-NLRRDDDGEK 403
+ + + ++ +S EP+ K Q P + + +
Sbjct: 125 NTSLNPQELQRQRQLRMLEDLGFKDLTLQSRGPLEPVLPKPRTNQEPGQPDAAPESPPVG 184
Query: 404 WICLQCTFANESANLNCIICEHAR 475
W C CTF N+ C +C AR
Sbjct: 185 WQCPGCTFINKPTRPGCEMCCRAR 208
>sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral proteinase D) (CANP D) (Small
optic lobes protein)
Length = 1594
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 347 HFVAQRPTENLRRDDDGEKWICLQCTFANESANLNCIIC 463
H + Q+ E R E W C +CT N S + C++C
Sbjct: 693 HHLQQQQAEAPR----DEPWTCKKCTLVNYSTAMACVVC 727
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,953,804
Number of Sequences: 369166
Number of extensions: 1219239
Number of successful extensions: 3110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3110
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)