Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A07
(718 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 ... 254 2e-67
sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 ... 249 4e-66
sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubar... 249 7e-66
sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 ... 239 4e-63
sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 ... 239 7e-63
sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kD... 239 7e-63
sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 ... 238 1e-62
sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 ... 238 2e-62
sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 pr... 237 3e-62
sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Lam... 223 4e-58
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 317
Score = 254 bits (648), Expect = 2e-67
Identities = 129/223 (57%), Positives = 155/223 (69%)
Frame = +1
Query: 4 ANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRG 183
ANN +FQM+QYV+ R G I + K +EK+ LAARAIAA+EN D+CVIS+RP QR
Sbjct: 27 ANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAAIENPADICVISARPYGQRA 86
Query: 184 VLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIA 363
VLKF YTGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP DHQ V E+S+VNIPVIA
Sbjct: 87 VLKFAHYTGATPIAGRFTPGTFTNQIQTAFREPRLLVVTDPYTDHQPVTEASYVNIPVIA 146
Query: 364 FCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRS 543
NTDS +KYVDI IPCNNK S+GLMW++LAREV R++G ISR + W+V VDLF R
Sbjct: 147 LTNTDSPLKYVDIAIPCNNKSIHSVGLMWWMLAREVLRLRGTISREVPWEVMVDLFFYRD 206
Query: 544 VEEEDKQQDDENLPQEINAINIGGEEAGFGPIGQPSQQLDDWA 672
EE +K+ E E + E P ++ DWA
Sbjct: 207 PEEAEKEAQAEQAAAEKDKAP-KEEFTADQAFTAPGTEVSDWA 248
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 316
Score = 249 bits (637), Expect = 4e-66
Identities = 124/231 (53%), Positives = 161/231 (69%), Gaps = 8/231 (3%)
Frame = +1
Query: 4 ANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRG 183
++N ++QM QYV+ R G +I L + +EKL +AAR I A+EN DVCVISSRP QR
Sbjct: 27 SSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVAIENPADVCVISSRPYGQRA 86
Query: 184 VLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIA 363
VLKFG +TGA PIAGR+TPGTFTNQIQ AFREPR+LIV+DP +DHQ V E+S+VNIPVIA
Sbjct: 87 VLKFGAHTGATPIAGRYTPGTFTNQIQAAFREPRILIVTDPRSDHQPVTEASYVNIPVIA 146
Query: 364 FCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRS 543
CNTDS ++YVDI IPCNNK SIGLMW++L+REV R++G ISR + W++ DL+ R
Sbjct: 147 LCNTDSPLRYVDIAIPCNNKSIHSIGLMWWMLSREVLRLRGAISRDVTWEIMCDLYFFRD 206
Query: 544 VEEEDKQQDD--------ENLPQEINAINIGGEEAGFGPIGQPSQQLDDWA 672
EE +K++ + + P + A + P GQP ++ DWA
Sbjct: 207 PEEAEKEEQEARDRATAVKEEPAQPYA-EQWSDPVAVPPAGQPVAEVTDWA 256
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
receptor homolog) (K14)
Length = 270
Score = 249 bits (635), Expect = 7e-66
Identities = 121/188 (64%), Positives = 145/188 (77%)
Frame = +1
Query: 4 ANNKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRG 183
+ N NFQM+QYV+ R G I L K +EKLQLAARAI A++N D+ VISSRP QR
Sbjct: 27 SENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVAIDNPSDIFVISSRPIGQRA 86
Query: 184 VLKFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIA 363
VLKF +YT PIAGRFTPG FTNQIQ AFREPRLL+V+DP DHQ ++E+S+VNIPVIA
Sbjct: 87 VLKFAKYTDTTPIAGRFTPGAFTNQIQPAFREPRLLVVTDPNTDHQPIMEASYVNIPVIA 146
Query: 364 FCNTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRS 543
F NTDS ++Y+DI IPCNNK SIGLMW+LLAREV R++G ISRS+EW V VDLF R
Sbjct: 147 FTNTDSPLRYIDIAIPCNNKSAHSIGLMWWLLAREVLRLRGTISRSVEWPVVVDLFFYRD 206
Query: 544 VEEEDKQQ 567
EE +K++
Sbjct: 207 PEEAEKEE 214
>sp|P50890|RSSA_CHICK 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (37LRP)
Length = 296
Score = 239 bits (611), Expect = 4e-63
Identities = 117/186 (62%), Positives = 142/186 (76%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VL
Sbjct: 29 NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVL 88
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VNIP IA C
Sbjct: 89 KFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNIPTIALC 148
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
NTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R E
Sbjct: 149 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE 208
Query: 550 EEDKQQ 567
E +K++
Sbjct: 209 EIEKEE 214
>sp|P08865|RSSA_HUMAN 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor) (Colon
carcinoma laminin-binding protein) (NEM/1CHD4)
(Multidrug resistance-associated protein MGr1-Ag)
Length = 295
Score = 239 bits (609), Expect = 7e-63
Identities = 116/186 (62%), Positives = 142/186 (76%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VL
Sbjct: 29 NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVL 88
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA C
Sbjct: 89 KFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
NTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R E
Sbjct: 149 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE 208
Query: 550 EEDKQQ 567
E +K++
Sbjct: 209 EIEKEE 214
>sp|P38983|RSSA_RAT 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 239 bits (609), Expect = 7e-63
Identities = 116/186 (62%), Positives = 142/186 (76%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VL
Sbjct: 29 NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVL 88
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA C
Sbjct: 89 KFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
NTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R E
Sbjct: 149 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE 208
Query: 550 EEDKQQ 567
E +K++
Sbjct: 209 EIEKEE 214
>sp|P38982|RSSA_CRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 238 bits (607), Expect = 1e-62
Identities = 116/186 (62%), Positives = 142/186 (76%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VL
Sbjct: 29 NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVL 88
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA C
Sbjct: 89 KFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
NTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R E
Sbjct: 149 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVRRMRGTISREHPWEVMPDLYFYRDPE 208
Query: 550 EEDKQQ 567
E +K++
Sbjct: 209 EIEKEE 214
>sp|P14206|RSSA_MOUSE 40S ribosomal protein SA (p40) (34/67 kDa laminin receptor)
Length = 295
Score = 238 bits (606), Expect = 2e-62
Identities = 116/186 (62%), Positives = 141/186 (75%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VL
Sbjct: 29 NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVL 88
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF TGA PIAGRFTPGTFTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA C
Sbjct: 89 KFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
NTDS + YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R E
Sbjct: 149 NTDSPLAYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE 208
Query: 550 EEDKQQ 567
E +K++
Sbjct: 209 EIEKEE 214
>sp|P26452|RSSA_BOVIN 40S ribosomal protein SA (p40) (C10 protein)
Length = 295
Score = 237 bits (604), Expect = 3e-62
Identities = 115/186 (61%), Positives = 141/186 (75%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N +FQM+QY++ R G +I L + +EKL LAARAI A+EN DV VISSR + QR VL
Sbjct: 29 NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVL 88
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF TGA PIAGRFTPG FTNQIQ AFREPRLL+V+DP ADHQ + E+S+VN+P IA C
Sbjct: 89 KFAAATGATPIAGRFTPGNFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALC 148
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
NTDS ++YVDI IPCNNKG S+GLMW++LAREV RM+G ISR W+V DL+ R E
Sbjct: 149 NTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPE 208
Query: 550 EEDKQQ 567
E +K++
Sbjct: 209 EIEKEE 214
>sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Laminin receptor homolog)
Length = 298
Score = 223 bits (568), Expect = 4e-58
Identities = 110/193 (56%), Positives = 142/193 (73%)
Frame = +1
Query: 10 NKNFQMDQYVFDRNKAGNFIFRLDKIFEKLQLAARAIAAVENSKDVCVISSRPSSQRGVL 189
N N+QM++YVF R G +IF L K +EKLQ+AAR I A+EN +D+ V S+RP QR VL
Sbjct: 33 NCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVAIENPQDIIVQSARPYGQRAVL 92
Query: 190 KFGRYTGANPIAGRFTPGTFTNQIQKAFREPRLLIVSDPIADHQAVIESSFVNIPVIAFC 369
KF +YTGAN IAGR TPGTFTNQ+Q +F EPRLLI++DP DHQ + E + NIP+IAFC
Sbjct: 93 KFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAFC 152
Query: 370 NTDSIIKYVDIVIPCNNKGEQSIGLMWYLLAREVCRMKGGISRSIEWDVKVDLFINRSVE 549
+TDS +++VDI IP NNKG+ SIG +++LLAR V +M+G I+ +WDV VDLF R E
Sbjct: 153 DTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYREPE 212
Query: 550 EEDKQQDDENLPQ 588
E + +DE PQ
Sbjct: 213 ETKPEDEDEAGPQ 225
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,927,346
Number of Sequences: 369166
Number of extensions: 1385112
Number of successful extensions: 4206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4188
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6365071885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)