Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A03-2
(329 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O02769|MTR1A_BOVIN Melatonin receptor type 1A (Mel-1A-R)... 30 1.3
sp|P20736|BM86_BOOMI Glycoprotein antigen BM86 precursor (P... 29 2.9
sp|Q49409|Y277_MYCGE Hypothetical protein MG277 29 3.8
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 29 3.8
sp|Q24434|ORD_DROME Protein ORD (Orientation disrupter prot... 28 4.9
sp|P48040|MTR1A_SHEEP Melatonin receptor type 1A (Mel-1A-R)... 28 4.9
sp|Q13585|MTR1L_HUMAN Melatonin-related receptor (G protein... 28 6.4
sp|Q8ST97|Y107_ENCCU Hypothetical protein ECU01_0070/ECU01_... 28 6.4
sp|P57402|ZNUB_BUCAI High-affinity zinc uptake system membr... 28 8.4
>sp|O02769|MTR1A_BOVIN Melatonin receptor type 1A (Mel-1A-R) (Mel1a melatonin receptor)
Length = 257
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 184 SFSGLQYNINFFLNDFYAVNSIFNYILIYLNRFCC 80
S S L ++ FL + S+FN I +NR+CC
Sbjct: 14 SLSSLHCQLSGFLMGLSVIGSVFNITGIAINRYCC 48
>sp|P20736|BM86_BOOMI Glycoprotein antigen BM86 precursor (Protective antigen)
Length = 650
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 287 NRSSCFNNWIKRKIW--LNYRKCIITYYHYTLPY 192
NR SC+ W RK +N +C++ Y+YT+ +
Sbjct: 312 NRQSCYCPWKSRKPGPNVNINECLLNEYYYTVSF 345
>sp|Q49409|Y277_MYCGE Hypothetical protein MG277
Length = 970
Score = 28.9 bits (63), Expect = 3.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 238 IIENASLLITIILYLMQSSFSGLQYNINFFLNDFYAVNSIFNYILIYLNRFC 83
+IE++SL+ I+Y +F G+ N N + A+ +F+ +L FC
Sbjct: 876 LIESSSLVFIFIIY-SGFNFGGIDGNFNLVIFYLIAIVGLFDVATAFLPMFC 926
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = -2
Query: 250 KYG*IIENASLLITIILYLMQSSFSGLQYNI------NFFLNDFYAVNSIFNYILIYLNR 89
KYG + + L++ + + +SG Y++ NF +N+ YA NS++ Y+ R
Sbjct: 1314 KYGTVKD---LMLDEVKEIEAFEYSGYVYDLSVEDNENFLVNNIYAHNSVYGYLAFPRAR 1370
Query: 88 FCCR 77
F R
Sbjct: 1371 FYSR 1374
>sp|Q24434|ORD_DROME Protein ORD (Orientation disrupter protein)
Length = 479
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 229 NASLLITIILYLMQSSFSGLQYNINFFLNDFYA 131
N S+L+ L + + FS +QY FF+NDFYA
Sbjct: 358 NQSVLVISHLETL-AEFSTMQYVTAFFMNDFYA 389
>sp|P48040|MTR1A_SHEEP Melatonin receptor type 1A (Mel-1A-R) (Mel1a melatonin receptor)
Length = 366
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 184 SFSGLQYNINFFLNDFYAVNSIFNYILIYLNRFCC 80
S S L ++ FL + S+F+ I +NR+CC
Sbjct: 110 SLSSLHCQLSGFLMGLSVIGSVFSITGIAINRYCC 144
>sp|Q13585|MTR1L_HUMAN Melatonin-related receptor (G protein-coupled receptor 50) (H9)
Length = 613
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 178 SGLQYNINFFLNDFYAVNSIFNYILIYLNRFC 83
S LQ + F+ V SIFN + I +NR+C
Sbjct: 97 SQLQCQMVGFITGLSVVGSIFNIVAIAINRYC 128
>sp|Q8ST97|Y107_ENCCU Hypothetical protein ECU01_0070/ECU01_1540/ECU02_1570/ECU04_0080/
ECU08_2100
Length = 254
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 223 SLLITIILYLMQSSFSGLQYNINFFLNDFYAVNSIF 116
SLL+ I L+ S+S +QY I +Y +N +F
Sbjct: 53 SLLLRFITILLPFSYSAVQYAILLHTTPYYTLNLLF 88
>sp|P57402|ZNUB_BUCAI High-affinity zinc uptake system membrane protein znuB
Length = 262
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 196 LMQSSFSGLQYNINFFLNDFYAVNSIFNYILIYL 95
L SS G+ +I F +N FYA+ + ++I I L
Sbjct: 38 LSHSSLLGIALSIAFNINSFYAILILMSFIAIIL 71
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,956,564
Number of Sequences: 369166
Number of extensions: 340867
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)