Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_A03-1
(484 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 83 4e-16
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 81 1e-15
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 81 1e-15
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 81 1e-15
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 81 1e-15
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 80 2e-15
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 80 2e-15
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 80 2e-15
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 79 4e-15
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 79 4e-15
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 82.8 bits (203), Expect = 4e-16
Identities = 47/90 (52%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +3
Query: 3 EDSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGE 170
E I+A +QV G VKWF+ K+GYGFI+ DD +D+FVH +I N S+ DGE
Sbjct: 25 EKKIIA-SQVSGTVKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGE 81
Query: 171 EVLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
+V FD+VEG KG EA NVTGP G +V G K
Sbjct: 82 KVEFDVVEGEKGNEAANVTGPEGSNVQGSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +3
Query: 6 DSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEE 173
D + T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 29 DKKVIATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGET 86
Query: 174 VLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP G V G K
Sbjct: 87 VEFDVVEGEKGAEAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +3
Query: 6 DSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEE 173
D + T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 49 DKKVIATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGET 106
Query: 174 VLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP G V G K
Sbjct: 107 VEFDVVEGEKGAEAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +3
Query: 6 DSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEE 173
D + T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 51 DKKVIATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGET 108
Query: 174 VLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP G V G K
Sbjct: 109 VEFDVVEGEKGAEAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 81.3 bits (199), Expect = 1e-15
Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 4/89 (4%)
Frame = +3
Query: 6 DSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEE 173
D + T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 48 DKKVIATKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGET 105
Query: 174 VLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP G V G K
Sbjct: 106 VEFDVVEGEKGAEAANVTGPGGVPVQGSK 134
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 80.1 bits (196), Expect = 2e-15
Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +3
Query: 3 EDSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGE 170
E ++A T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 75 EKKVLA-TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGE 131
Query: 171 EVLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP+G V G +
Sbjct: 132 TVEFDVVEGEKGAEAANVTGPDGVPVEGSR 161
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 80.1 bits (196), Expect = 2e-15
Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +3
Query: 3 EDSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGE 170
E ++A T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 83 EKKVLA-TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGE 139
Query: 171 EVLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP+G V G +
Sbjct: 140 TVEFDVVEGEKGAEAANVTGPDGVPVEGSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 80.1 bits (196), Expect = 2e-15
Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +3
Query: 3 EDSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGE 170
E ++A T+V+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 75 EKKVLA-TKVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGE 131
Query: 171 EVLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP+G V G +
Sbjct: 132 TVEFDVVEGEKGAEAANVTGPDGVPVEGSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 79.3 bits (194), Expect = 4e-15
Identities = 43/83 (51%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Frame = +3
Query: 24 TQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEEVLFDIV 191
TQV G VKWF+ +NGYGFI+ +D + +D+FVH +I N S+ DGE V FD+V
Sbjct: 40 TQVQGTVKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVV 97
Query: 192 EGAKGLEARNVTGPNGGDVIGGK 260
EG KG EA NVTGP G V G +
Sbjct: 98 EGEKGAEAANVTGPGGVPVKGSR 120
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 79.3 bits (194), Expect = 4e-15
Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Frame = +3
Query: 6 DSIMAQTQVIGHVKWFSSKNGYGFISVDDDSNSKDIFVHFKSIAATNAT----SLADGEE 173
D + QV+G VKWF+ +NGYGFI+ +D +D+FVH +I N S+ DGE
Sbjct: 86 DKPVLAIQVLGTVKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGET 143
Query: 174 VLFDIVEGAKGLEARNVTGPNGGDVIGGK 260
V FD+VEG KG EA NVTGP G V G +
Sbjct: 144 VEFDVVEGEKGAEATNVTGPGGVPVKGSR 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,183,395
Number of Sequences: 369166
Number of extensions: 558019
Number of successful extensions: 1912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1839
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2871696580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)