Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_P24
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8XWE4|LPXK_RALSO Tetraacyldisaccharide 4'-kinase (Lipid... 32 2.3
sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conducta... 31 5.2
sp|Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130 (Nucleo... 30 6.7
sp|Q9CNC4|LST_PASMU CMP-N-acetylneuraminate-beta-galactosam... 30 6.7
sp|Q6PCX9|TRI37_MOUSE Tripartite motif protein 37 30 8.8
sp|Q05489|LIP_BURGL Lipase precursor (Triacylglycerol lipase) 30 8.8
sp|O94972|TRI37_HUMAN Tripartite motif protein 37 (Mulibrey... 30 8.8
>sp|Q8XWE4|LPXK_RALSO Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase)
Length = 349
Score = 32.0 bits (71), Expect = 2.3
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Frame = +3
Query: 234 CAESAYHKPQGCNDIVCDTDLCNIQLNVKDEYVFVDYKYLVK--LFPAGKLKKLSKLFHV 407
CA++ GCN IVCD L + +L E V D + L PAG L++
Sbjct: 139 CAQTLLASHPGCNVIVCDDGLQHYRLRRDIEIVVFDLRMGGNGFLLPAGPLRE------- 191
Query: 408 VLMGRSEAGTVIYESSICSFVTRSDAVKLGLQFQD 512
M R T+I + + + R D + L QD
Sbjct: 192 -PMTRRRDATLINDPNYRATHDRPDIYGMRLDLQD 225
>sp|P26361|CFTR_MOUSE Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1476
Score = 30.8 bits (68), Expect = 5.2
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -1
Query: 580 KINLNPDRSMEKLTL-SRILNQFVSWNCRPNLTASDLVTNEQILDS*ITVPASDLPINTT 404
KI+L P S+ ++ + SR L+Q + N + DL E LD I +P P+ TT
Sbjct: 788 KISLVPQISLNEVDVYSRRLSQDSTLNITEEINEEDL--KECFLDDVIKIP----PV-TT 840
Query: 403 WNSFDSFFNLPAG 365
WN++ +F L G
Sbjct: 841 WNTYLRYFTLHKG 853
>sp|Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein) (140 kDa
nucleolar phosphoprotein) (Nopp140) (Nucleolar and
coiled-body phosphoprotein 1)
Length = 699
Score = 30.4 bits (67), Expect = 6.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 636 TPKKRTPMKKLFAESPAKAVDSPVFLMNIGTFRLSQSDMTSDTDNHIEKR 785
TPKK P K++ A++P KA +P R S S S +D E++
Sbjct: 238 TPKKTVPKKQVVAKAPVKAATTPT--------RKSSSSEDSSSDEEEEQK 279
>sp|Q9CNC4|LST_PASMU CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,
3-sialyltransferase (Beta-galactoside
alpha-2,3-sialyltransferase) (Alpha 2,3-ST)
(Lipooligosaccharide sialyltransferase)
Length = 308
Score = 30.4 bits (67), Expect = 6.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -3
Query: 452 RLVDHCSRLRSAHQHH-----MEQFRQLLQLAGGKQFDQVFIINKNVFVLDVQLDIAEIC 288
RL C S QH +++ L + GK FDQVF+ N N D+Q+
Sbjct: 46 RLAQQCQGFFSMVQHKDRFNLLKEILYLKRTFSGKHFDQVFVANIN----DLQIQFLLSA 101
Query: 287 VAHNIVTT 264
+ N++ T
Sbjct: 102 IDFNLLNT 109
>sp|Q6PCX9|TRI37_MOUSE Tripartite motif protein 37
Length = 961
Score = 30.0 bits (66), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 698 INSFCW*FSKQFLHWCSLFGGFFTGH 621
++ FCW K H C+L+GG GH
Sbjct: 102 LSVFCWTCKKCICHQCALWGGMHGGH 127
>sp|Q05489|LIP_BURGL Lipase precursor (Triacylglycerol lipase)
Length = 358
Score = 30.0 bits (66), Expect = 8.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = -3
Query: 458 NTRLVDHCSRL------RSAHQHHMEQFRQLLQLAGGKQFDQVFIINKNVFVLDVQ 309
N LV CS L S H +H+++ QLL + G D V +I +V L +Q
Sbjct: 301 NDGLVSRCSSLFGQVISTSYHWNHLDEINQLLGVRGANAEDPVAVIRTHVNRLKLQ 356
>sp|O94972|TRI37_HUMAN Tripartite motif protein 37 (Mulibrey nanism protein)
Length = 964
Score = 30.0 bits (66), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 698 INSFCW*FSKQFLHWCSLFGGFFTGH 621
++ FCW K H C+L+GG GH
Sbjct: 102 LSVFCWTCKKCICHQCALWGGMHGGH 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,612,343
Number of Sequences: 369166
Number of extensions: 2293154
Number of successful extensions: 5706
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5706
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)