Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_P03
(821 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 313 3e-85
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 312 6e-85
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 304 2e-82
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 303 5e-82
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 288 1e-77
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 288 1e-77
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 286 4e-77
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 248 1e-65
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 247 3e-65
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 244 2e-64
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 313 bits (803), Expect = 3e-85
Identities = 150/265 (56%), Positives = 190/265 (71%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV PN +++E HPDKNP+ G+KFK+ISQA+EVLAD KKR++YD GGE
Sbjct: 10 VLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDKGGE 69
Query: 206 QALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLA 385
QA+KEGG GF + V+HQL+VTL++LY G TRKLA
Sbjct: 70 QAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDLYNGATRKLA 127
Query: 386 IQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVI 565
+QKNVICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I
Sbjct: 128 LQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERI 187
Query: 566 NERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKP 745
+ +DRCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K
Sbjct: 188 SPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKD 247
Query: 746 HNVFTRKKADLIYNMKLDLVDSLCG 820
H VFTR+ DL M + LV++LCG
Sbjct: 248 HAVFTRRGEDLFMCMDIQLVEALCG 272
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 312 bits (800), Expect = 6e-85
Identities = 149/265 (56%), Positives = 190/265 (71%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV PN +++E HPDKNP+ G+KFK+ISQA+EVL+D KKR++YD GGE
Sbjct: 10 VLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGE 69
Query: 206 QALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLA 385
QA+KEGG GF + V+HQL+VTL++LY G TRKLA
Sbjct: 70 QAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDLYNGATRKLA 127
Query: 386 IQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVI 565
+QKNVICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C C+G E I
Sbjct: 128 LQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERI 187
Query: 566 NERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKP 745
+ +DRCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI IVL++K
Sbjct: 188 SPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKD 247
Query: 746 HNVFTRKKADLIYNMKLDLVDSLCG 820
H VFTR+ DL M + LV++LCG
Sbjct: 248 HAVFTRRGEDLFMCMDIQLVEALCG 272
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 304 bits (778), Expect = 2e-82
Identities = 144/265 (54%), Positives = 188/265 (70%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV P+ S +E HPDKNPD G+KFK ISQA+EVL+DPKKR +YD GGE
Sbjct: 10 ILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYDQGGE 69
Query: 206 QALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLA 385
QA+KEGG S + V+HQL+VTL++LY G T+KLA
Sbjct: 70 QAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKN-VVHQLSVTLEDLYNGVTKKLA 128
Query: 386 IQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVI 565
+QKNVIC+KC G GGK+G+V+KC C+G G+++HI+Q+GPGMVQQ+QT C CKG+ E I
Sbjct: 129 LQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERI 188
Query: 566 NERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKP 745
N +DRC+ C G KV+REKK++EVH++KGM DGQ+I F+GEGDQEP LEPGD+ IVL++K
Sbjct: 189 NPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKD 248
Query: 746 HNVFTRKKADLIYNMKLDLVDSLCG 820
H+VF R+ DLI MK+ L ++LCG
Sbjct: 249 HSVFQRRGHDLIMKMKIQLSEALCG 273
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 303 bits (775), Expect = 5e-82
Identities = 145/265 (54%), Positives = 187/265 (70%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV P+ S +E HPDKNPD G+KFK ISQA+EVL+DPKKR IYD GGE
Sbjct: 10 ILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGE 69
Query: 206 QALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGNTRKLA 385
QA+KEGG S + V+HQL+VTL++LY G T+KLA
Sbjct: 70 QAIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRGKN-VVHQLSVTLEDLYNGITKKLA 128
Query: 386 IQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVI 565
+QKNVIC+KC G GGK+G+V+KC C+G G++VHI+Q+GPGMVQQ+QT C CKG+ E I
Sbjct: 129 LQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIECKGQGERI 188
Query: 566 NERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKP 745
N +DRC+ C G KV REKK++EVH++KGM DGQ+I F+GEGDQEP L+PGD+ IVL++K
Sbjct: 189 NPKDRCENCSGAKVTREKKIIEVHVEKGMKDGQKILFHGEGDQEPELDPGDVIIVLDQKD 248
Query: 746 HNVFTRKKADLIYNMKLDLVDSLCG 820
H+VF R+ DLI MK+ L ++LCG
Sbjct: 249 HSVFQRRGQDLIMKMKIQLSEALCG 273
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 288 bits (738), Expect = 1e-77
Identities = 141/270 (52%), Positives = 178/270 (65%), Gaps = 5/270 (1%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR++YD GE
Sbjct: 12 ILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGE 71
Query: 206 QALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGN 370
Q L+EG G G F + ++H L V+L++LY G
Sbjct: 72 QGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGK 131
Query: 371 TRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKG 550
T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C G
Sbjct: 132 TTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNG 191
Query: 551 EREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIV 730
E EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++
Sbjct: 192 EGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLL 251
Query: 731 LEEKPHNVFTRKKADLIYNMKLDLVDSLCG 820
L+EK H VF R DL K+ LV++LCG
Sbjct: 252 LQEKEHEVFQRDGNDLHMTYKIGLVEALCG 281
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 288 bits (738), Expect = 1e-77
Identities = 141/270 (52%), Positives = 178/270 (65%), Gaps = 5/270 (1%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR++YD GE
Sbjct: 12 ILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGE 71
Query: 206 QALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGN 370
Q L+EG G G F + ++H L V+L++LY G
Sbjct: 72 QGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGK 131
Query: 371 TRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKG 550
T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C G
Sbjct: 132 TTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNG 191
Query: 551 EREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIV 730
E EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI ++
Sbjct: 192 EGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLL 251
Query: 731 LEEKPHNVFTRKKADLIYNMKLDLVDSLCG 820
L+EK H VF R DL K+ LV++LCG
Sbjct: 252 LQEKEHEVFQRDGNDLHMTYKIGLVEALCG 281
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 286 bits (733), Expect = 4e-77
Identities = 140/270 (51%), Positives = 177/270 (65%), Gaps = 5/270 (1%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR++YD GE
Sbjct: 12 ILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKRELYDRYGE 71
Query: 206 QALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELYKGN 370
Q L+EG G G F + ++H L V+L++LY G
Sbjct: 72 QGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGK 131
Query: 371 TRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKG 550
T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ+ C C G
Sbjct: 132 TTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNG 191
Query: 551 EREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIV 730
E EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+EPGDI +
Sbjct: 192 EGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGVEPGDIVLF 251
Query: 731 LEEKPHNVFTRKKADLIYNMKLDLVDSLCG 820
++EK H VF R DL K+ LV++LCG
Sbjct: 252 VQEKEHEVFQRDGNDLHMTYKIGLVEALCG 281
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 248 bits (634), Expect = 1e-65
Identities = 124/247 (50%), Positives = 162/247 (65%), Gaps = 6/247 (2%)
Frame = +2
Query: 98 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEG-GGDSGFHNXXXXXXXXX 274
HPDK D +KFKE++QA++VL+DP+KR+IYD GE ALKEG GG G H+
Sbjct: 20 HPDKGGDP-EKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDHDPFDIFQSFF 78
Query: 275 XXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEG 439
V+H L V+L+ELY G ++KL++ +NVIC KCNG+G K G
Sbjct: 79 GGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSG 138
Query: 440 AVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREK 619
A +C SC+G G++V IRQLGPGM+QQMQ C CKG E+IN++DRC C+G+KVV+EK
Sbjct: 139 ASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCPLCKGEKVVQEK 198
Query: 620 KVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLD 799
KVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F RK DL Y L
Sbjct: 199 KVLEVHVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFQRKGDDLFYKHTLS 258
Query: 800 LVDSLCG 820
L ++LCG
Sbjct: 259 LTEALCG 265
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 247 bits (630), Expect = 3e-65
Identities = 124/271 (45%), Positives = 168/271 (61%), Gaps = 6/271 (2%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV+ N + ++ HPDK D +KFKEI QA+EVL DP+KR+IYD GE
Sbjct: 17 VLGVSKNATPEDLKKAYRKAAIKNHPDKGGDP-EKFKEIGQAYEVLNDPEKREIYDQYGE 75
Query: 206 QALKEG-GGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKG 367
+ LKEG GG G H+ V+H L V+L++LY G
Sbjct: 76 EGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNG 135
Query: 368 NTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCK 547
++KL++ +NV+C KC G+G K GA C SC+G G++V IRQLGPGM+QQMQ C CK
Sbjct: 136 TSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECK 195
Query: 548 GEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICI 727
G E+I+++DRC +C+G+KVV++KKVLEVH++KGM +GQ+I F GE D+ P GDI
Sbjct: 196 GTGEMISDKDRCPQCKGEKVVQQKKVLEVHVEKGMQNGQKITFPGEADEAPDTVTGDIVF 255
Query: 728 VLEEKPHNVFTRKKADLIYNMKLDLVDSLCG 820
VL++K H F RK DL Y L L ++LCG
Sbjct: 256 VLQQKEHPKFKRKGDDLFYEHSLSLTEALCG 286
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 244 bits (623), Expect = 2e-64
Identities = 125/270 (46%), Positives = 164/270 (60%), Gaps = 5/270 (1%)
Frame = +2
Query: 26 LLGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGE 205
+LGV+ N S+ + HPDK D +KFKE++QA+EVL+DP+KR+IYD GE
Sbjct: 16 ILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIYDQYGE 74
Query: 206 QALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGN 370
ALKEG G G H+ VIH L V+L++LY G
Sbjct: 75 DALKEGMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGT 134
Query: 371 TRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKG 550
++KL++ +NVIC KC G+G K GA KC C+G G++V IR LGP M+QQMQ C CKG
Sbjct: 135 SKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKG 194
Query: 551 EREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIV 730
E IN++DRC +C+G+KVV+EKKVLEV ++KGM + Q+I F GE D+ P GDI V
Sbjct: 195 TGETINDKDRCSQCKGEKVVQEKKVLEVIVEKGMQNAQKITFPGEADEAPDTVTGDIVFV 254
Query: 731 LEEKPHNVFTRKKADLIYNMKLDLVDSLCG 820
L++K H F RK DL L LV+SLCG
Sbjct: 255 LQQKEHPKFKRKGDDLFVEHTLSLVESLCG 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,006,630
Number of Sequences: 369166
Number of extensions: 1605607
Number of successful extensions: 5631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4834
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7907893860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)