Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_O23
(615 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta... 182 5e-46
sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein bet... 177 1e-44
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 174 1e-43
sp|P26308|GBB1_DROME Guanine nucleotide-binding protein bet... 174 2e-43
sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I... 174 2e-43
sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein beta... 172 5e-43
sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I... 172 6e-43
sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I... 172 8e-43
sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I... 170 2e-42
sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/... 170 2e-42
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 182 bits (463), Expect = 5e-46
Identities = 82/92 (89%), Positives = 90/92 (97%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFDIR+DQEIGMYS+D+IICGITSVAFSKSGRLLLGGYDDFNCNVWD LKQ+RAGVL
Sbjct: 250 TCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGRLLLGGYDDFNCNVWDVLKQERAGVL 309
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV+EDGMA+ TGSWDSFL++WN
Sbjct: 310 AGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 341
Score = 31.6 bits (70), Expect = 1.7
Identities = 19/92 (20%), Positives = 43/92 (46%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L++I + +I + + + S++ + R + G D + ++D
Sbjct: 166 TCALWNIETGNQITSFGGHT--GDVMSLSLAPDMRTFVSGACDASAKLFDIRDGICKQTF 223
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 224 TGHESDINAITYFPNGFAFATGSDDATCRLFD 255
>sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein beta subunit 1
sp|Q61ZF6|GBB1_CAEBR Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 177 bits (450), Expect = 1e-44
Identities = 77/92 (83%), Positives = 89/92 (96%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFDIR+DQE+ MYS+D+IICGITSVAFSKSGRLL GYDDFNCNVWD+++Q+RAGVL
Sbjct: 249 TCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSMRQERAGVL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV+EDGMA+CTGSWDSFL++WN
Sbjct: 309 AGHDNRVSCLGVTEDGMAVCTGSWDSFLKIWN 340
Score = 38.1 bits (87), Expect = 0.018
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ + + S++ S R + G D + +WD
Sbjct: 165 TCALWDIETGQQCTAFTGHT--GDVMSLSLSPDFRTFISGACDASAKLWDIRDGMCKQTF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + G A TGS D+ R+++
Sbjct: 223 PGHESDINAVAFFPSGNAFATGSDDATCRLFD 254
Score = 31.6 bits (70), Expect = 1.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D C +WD + GH V L +S D +G+ D+ ++W+
Sbjct: 163 DMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFISGACDASAKLWD 212
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 174 bits (442), Expect = 1e-43
Identities = 78/92 (84%), Positives = 88/92 (95%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFD+R+DQE+ +YS+D+IICGITSVAFSKSGRLLL GYDDFNCNVWDTLK DRAGVL
Sbjct: 249 TCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV++DGMA+ TGSWDSFLR+WN
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
Score = 36.6 bits (83), Expect = 0.052
Identities = 23/92 (25%), Positives = 43/92 (46%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ S + S++ S R + G D + +WD
Sbjct: 165 TCALWDIETAQQTTTFTGHS--GDVMSLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH + ++ + +G A TGS D+ R+++
Sbjct: 223 TGHVSDINAVSFFPNGYAFATGSDDATCRLFD 254
Score = 31.2 bits (69), Expect = 2.2
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D C +WD + GH V L +S D +G+ D+ ++W+
Sbjct: 163 DTTCALWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLWD 212
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 174 bits (441), Expect = 2e-43
Identities = 77/92 (83%), Positives = 88/92 (95%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFDIR+DQE+ MYS+D+IICGITSVAFSKSGRLLL GYDDFNCNVWDT+K +R+G+L
Sbjct: 249 TCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTMKAERSGIL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV+E+GMA+ TGSWDSFLRVWN
Sbjct: 309 AGHDNRVSCLGVTENGMAVATGSWDSFLRVWN 340
Score = 31.2 bits (69), Expect = 2.2
Identities = 17/92 (18%), Positives = 44/92 (47%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
+C L+DI + ++ + + + +++ + + + G D + +WD +
Sbjct: 165 SCGLWDIETGLQVTSFLGHT--GDVMALSLAPQCKTFVSGACDASAKLWDIREGVCKQTF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 223 PGHESDINAVTFFPNGQAFATGSDDATCRLFD 254
>sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1) (XGbeta1)
Length = 340
Score = 174 bits (440), Expect = 2e-43
Identities = 77/92 (83%), Positives = 88/92 (95%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFD+R+DQE+ +YS+D+IICGITSVAFSKSGRLLL GYDDFNCNVWDTLK DRAGVL
Sbjct: 249 TCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKADRAGVL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 38.9 bits (89), Expect = 0.011
Identities = 21/92 (22%), Positives = 45/92 (48%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ + + S++ + R + G D + +WD +
Sbjct: 165 TCALWDIETGQQTTTFTGHT--GDVMSLSLAPDSRCFVSGACDASAKLWDVREGMCRQTF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 30.8 bits (68), Expect = 2.9
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D C +WD + GH V L ++ D +G+ D+ ++W+
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDSRCFVSGACDASAKLWD 212
>sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 172 bits (437), Expect = 5e-43
Identities = 78/92 (84%), Positives = 86/92 (93%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFDIR+DQEIGMYS+D+IICGITSVAFSKSGRLLLG YDDFNCNVWD LKQ+ GVL
Sbjct: 250 TCRLFDIRADQEIGMYSHDNIICGITSVAFSKSGRLLLGRYDDFNCNVWDVLKQETHGVL 309
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV+EDG A+ TGSWDSFL++WN
Sbjct: 310 AGHDNRVSCLGVTEDGSAVATGSWDSFLKIWN 341
Score = 36.6 bits (83), Expect = 0.052
Identities = 21/92 (22%), Positives = 45/92 (48%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
+C L+DI + Q+ ++ + + S++ S R + G D + +WD
Sbjct: 166 SCALWDIETGQQTTSFTGHT--GDVMSLSTSPDFRTFVSGACDASAKLWDVRDGMCKQTF 223
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
+GH++ ++ + +G A TGS D+ R+++
Sbjct: 224 SGHESDINAITYFPNGHAFATGSDDATCRLFD 255
Score = 30.8 bits (68), Expect = 2.9
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D +C +WD + GH V L S D +G+ D+ ++W+
Sbjct: 164 DMSCALWDIETGQQTTSFTGHTGDVMSLSTSPDFRTFVSGACDASAKLWD 213
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 172 bits (436), Expect = 6e-43
Identities = 75/92 (81%), Positives = 88/92 (95%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFDIR+DQE+ MYS+D+IICGITSVAFSKSG+LLL GYDDFNCNVWD+++ +RAGVL
Sbjct: 249 TCRLFDIRADQELAMYSHDNIICGITSVAFSKSGKLLLAGYDDFNCNVWDSMRTERAGVL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV+EDGMA+ TGSWDSFL++WN
Sbjct: 309 AGHDNRVSCLGVTEDGMAVATGSWDSFLKIWN 340
Score = 37.4 bits (85), Expect = 0.031
Identities = 22/92 (23%), Positives = 44/92 (47%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ + + S++ S + R G D + +WD
Sbjct: 165 TCALWDIETGQQCTQFTGHT--GDVMSLSLSPNMRTFTSGACDASAKLWDIRDGMCRQTF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 223 PGHESDINAVTFFPNGHAFATGSDDATCRLFD 254
>sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 172 bits (435), Expect = 8e-43
Identities = 76/92 (82%), Positives = 87/92 (94%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFD+R+DQE+ +YS+D+IICGITSVAFSKSGRLLL GYDDFNCNVWD LK DRAGVL
Sbjct: 249 TCRLFDLRADQELMVYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/92 (23%), Positives = 46/92 (50%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ + + S++ + RL + G D + +WD +
Sbjct: 165 TCALWDIETGQQTTTFAGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 31.2 bits (69), Expect = 2.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D C +WD + AGH V L ++ D +G+ D+ ++W+
Sbjct: 163 DTTCALWDIETGQQTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 326
Score = 170 bits (431), Expect = 2e-42
Identities = 74/92 (80%), Positives = 87/92 (94%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFD+R+DQE+ MYS+D+IICGITSVAFS+SGRLLL GYDDFNCN+WD +K DRAGVL
Sbjct: 235 TCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVL 294
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 295 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 326
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ S + S++ + GR + G D + +WD
Sbjct: 151 TCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTF 208
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 209 IGHESDINAVAFFPNGYAFTTGSDDATCRLFD 240
Score = 34.7 bits (78), Expect = 0.20
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D C +WD + AGH V L ++ DG +G+ D+ +++W+
Sbjct: 149 DTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 198
>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2
(Transducin beta chain 2) (G protein beta 2 subunit)
Length = 340
Score = 170 bits (431), Expect = 2e-42
Identities = 74/92 (80%), Positives = 87/92 (94%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TCRLFD+R+DQE+ MYS+D+IICGITSVAFS+SGRLLL GYDDFNCN+WD +K DRAGVL
Sbjct: 249 TCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVL 308
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
AGHDNRVSCLGV++DGMA+ TGSWDSFL++WN
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/92 (25%), Positives = 45/92 (48%)
Frame = +1
Query: 1 TCRLFDIRSDQEIGMYSNDSIICGITSVAFSKSGRLLLGGYDDFNCNVWDTLKQDRAGVL 180
TC L+DI + Q+ ++ S + S++ + GR + G D + +WD
Sbjct: 165 TCALWDIETGQQTVGFAGHS--GDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTF 222
Query: 181 AGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
GH++ ++ + +G A TGS D+ R+++
Sbjct: 223 IGHESDINAVAFFPNGYAFTTGSDDATCRLFD 254
Score = 34.7 bits (78), Expect = 0.20
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 127 DFNCNVWDTLKQDRAGVLAGHDNRVSCLGVSEDGMAICTGSWDSFLRVWN 276
D C +WD + AGH V L ++ DG +G+ D+ +++W+
Sbjct: 163 DTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWD 212
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,652,362
Number of Sequences: 369166
Number of extensions: 1458378
Number of successful extensions: 4396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4271
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)