Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_O18
(187 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UPW6|SATB2_HUMAN DNA-binding protein SATB2 (Special AT... 29 2.9
sp|P18170|DEC12_DROME Defective chorion-1 protein, FC106 is... 29 2.9
sp|P18171|DEC13_DROME Defective chorion-1 protein, FC177 is... 29 2.9
sp|P18169|DC11_DROME Defective chorion-1 protein, FC125 iso... 29 2.9
sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 28 8.4
sp|Q09726|YA46_SCHPO Hypothetical protein C31A2.06 in chrom... 28 8.4
sp|Q49429|P200_MYCGE Protein P200 28 8.4
>sp|Q9UPW6|SATB2_HUMAN DNA-binding protein SATB2 (Special AT-rich sequence-binding protein
2)
Length = 733
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 37 ELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQ 174
E +E++ + + EEGSEE + E D S P EID +
Sbjct: 688 EYKDEELLTESEENDSEEGSEEMYKVEAEEENADKSKAAPAEIDQR 733
>sp|P18170|DEC12_DROME Defective chorion-1 protein, FC106 isoform precursor [Contains:
Defective chorion-1 protein, FC106 isoform; FC106 S80;
FC106 S60]
Length = 950
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 555 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMVQQRQ 606
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 581 WSEEQAKIQQNQQQIQQNPMMVQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 632
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 503 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 554
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 529 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 580
Score = 27.7 bits (60), Expect = 8.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEE 102
W+E + N +QI Q+P +++ + SEE
Sbjct: 607 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE 636
>sp|P18171|DEC13_DROME Defective chorion-1 protein, FC177 isoform precursor
Length = 1590
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 555 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMVQQRQ 606
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 581 WSEEQAKIQQNQQQIQQNPMMVQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 632
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 503 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 554
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 529 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 580
Score = 27.7 bits (60), Expect = 8.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEE 102
W+E + N +QI Q+P +++ + SEE
Sbjct: 607 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE 636
>sp|P18169|DC11_DROME Defective chorion-1 protein, FC125 isoform precursor
Length = 1208
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 555 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMVQQRQ 606
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 581 WSEEQAKIQQNQQQIQQNPMMVQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 632
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 503 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 554
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQ 177
W+E + N +QI Q+P +++ + SEE KI ++ I P+ + +Q
Sbjct: 529 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE--QAKIQQNQQQIQQN-PMMMQQRQ 580
Score = 27.7 bits (60), Expect = 8.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEE 102
W+E + N +QI Q+P +++ + SEE
Sbjct: 607 WSEEQAKIQQNQQQIQQNPMMMQQRQWSEE 636
>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3
Length = 506
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 1 EINSWNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQQD 180
E NS +E + E + P +E EE N ++ EEK++ EIP D +++
Sbjct: 163 EWNSEDEEFSSDEEVQDNTPSEMPPLEGEEEENPKENPEVKAEEKEVPKEIPEVKDEEKE 222
Query: 181 I 183
+
Sbjct: 223 V 223
>sp|Q09726|YA46_SCHPO Hypothetical protein C31A2.06 in chromosome I
Length = 542
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 13 WNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIP 156
W+ L + + NE++ L+ E +E INY + N +D+ S+ P
Sbjct: 452 WDNLRKAGVVFNERLYNHVYLLAFESKNERVINYVLTNIFEDMVSQSP 499
>sp|Q49429|P200_MYCGE Protein P200
Length = 1616
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 1 EINSWNELSRNCELNNEQIPQSPQLIEHEEGSEEFINYKIMNEEKDISSEIPVEIDSQ 174
E++S N++ ++ E + + HEE EFIN + +E +E DS+
Sbjct: 673 ELDSVNDVDKSLETKTTSVE-----LNHEEIGNEFINLDVSEKEVQEQPTTQLETDSE 725
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.304 0.127 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,129,529
Number of Sequences: 369166
Number of extensions: 225097
Number of successful extensions: 496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)