Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_O05
(638 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein ... 50 5e-06
sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein ... 48 2e-05
sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 39 0.011
sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 39 0.011
sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 ... 39 0.015
sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein ... 39 0.015
sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin) 30 5.2
sp|O02491|HMEN_ANOGA Segmentation polarity homeobox protein... 29 8.9
sp|Q65V59|UXAC_MANSM Uronate isomerase (Glucuronate isomera... 29 8.9
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP) (DNA helicase V) (HDH V)
Length = 643
Score = 50.1 bits (118), Expect = 5e-06
Identities = 22/44 (50%), Positives = 28/44 (63%)
Frame = +2
Query: 227 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 358
Y + + + A+PAPT P GQPDYSAAWAEYYR+Q +
Sbjct: 581 YTKAWEEYYKKMGQAVPAPTGAPPGGQPDYSAAWAEYYRQQAAY 624
Score = 30.4 bits (67), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 275 PAPTINPQTGQPDYSAAWAEYYRRQG 352
PAP GQ DY+ AW EYY++ G
Sbjct: 573 PAPA-----GQVDYTKAWEEYYKKMG 593
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
(FBP)
Length = 651
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +2
Query: 227 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 358
Y + + + A+PAP P GQPDYSAAWAEYYR+Q +
Sbjct: 578 YTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAY 621
Score = 30.4 bits (67), Expect = 4.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 275 PAPTINPQTGQPDYSAAWAEYYRRQG 352
PAP GQ DY+ AW EYY++ G
Sbjct: 570 PAPA-----GQVDYTKAWEEYYKKMG 590
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
Length = 572
Score = 38.9 bits (89), Expect = 0.011
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 227 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQ 349
+ + Y W Q +P+ PQ+ QP+YS AW +YY++Q
Sbjct: 488 WGSTYQAWQQ-PTQQVPSQQSQPQSSQPNYSKAWEDYYKKQ 527
Score = 32.7 bits (73), Expect = 0.81
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 260 AASAMPAPTINPQTGQPDYSAAWAEYYRRQ 349
AASA P + PDY+ AWAEYYR+Q
Sbjct: 530 AASAAPQAS-----SPPDYTMAWAEYYRQQ 554
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
Length = 769
Score = 38.9 bits (89), Expect = 0.011
Identities = 19/36 (52%), Positives = 21/36 (58%)
Frame = +2
Query: 251 TQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 358
T G A P P QPDYSAAWAEYYR+Q +
Sbjct: 719 TGGGPGAPPGP-------QPDYSAAWAEYYRQQAAY 747
Score = 35.8 bits (81), Expect = 0.095
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Frame = +2
Query: 218 SGIYDNIYS---GWTQGAASAMPAPTIN------PQTGQPDYSAAWAEYYRRQG 352
+G Y + Y G G A AP + P TGQ DY+ AW EYY++ G
Sbjct: 635 AGYYSHYYQQPPGPVPGQPPAPTAPPVQGEPPQPPPTGQSDYTKAWEEYYKKIG 688
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (MAP2 RNA
trans-acting protein 1) (MARTA1)
Length = 721
Score = 38.5 bits (88), Expect = 0.015
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 227 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 358
++ Y Q A P P QPDYSAAWAEYYR+Q +
Sbjct: 649 WEEYYKKQAQVATGGGPGA---PPGSQPDYSAAWAEYYRQQAAY 689
Score = 34.7 bits (78), Expect = 0.21
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 260 AASAMPAPTINPQTGQPDYSAAWAEYYRRQG 352
A A P P TGQ DY+ AW EYY++ G
Sbjct: 601 APPAQGEPPQPPPTGQSDYTKAWEEYYKKIG 631
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
type splicing regulatory protein) (KSRP) (p75)
Length = 707
Score = 38.5 bits (88), Expect = 0.015
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = +2
Query: 227 YDNIYSGWTQGAASAMPAPTINPQTGQPDYSAAWAEYYRRQGMH 358
++ Y Q A P P QPDYSAAWAEYYR+Q +
Sbjct: 646 WEEYYKKQAQVATGGGPGA---PPGSQPDYSAAWAEYYRQQAAY 686
Score = 34.7 bits (78), Expect = 0.21
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 260 AASAMPAPTINPQTGQPDYSAAWAEYYRRQG 352
A A P P TGQ DY+ AW EYY++ G
Sbjct: 598 APPAQGEPPQPPPTGQSDYTKAWEEYYKKIG 628
>sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin)
Length = 239
Score = 30.0 bits (66), Expect = 5.2
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 373 DSATSSTRWSS-CNYGSCPDYTTTYRIIQC 459
++A+++ RW+S CN G PDY+ I+C
Sbjct: 62 EAASNAERWASNCNLGHSPDYSRVLEGIEC 91
>sp|O02491|HMEN_ANOGA Segmentation polarity homeobox protein engrailed
Length = 596
Score = 29.3 bits (64), Expect = 8.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 432 HHNLPHHTMPLHKHKQRQLPS 494
HH LPHH P H+H +Q PS
Sbjct: 100 HHQLPHH--PHHQHHPQQQPS 118
>sp|Q65V59|UXAC_MANSM Uronate isomerase (Glucuronate isomerase) (Uronic isomerase)
Length = 467
Score = 29.3 bits (64), Expect = 8.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 244 GVDSRRCVGNASAYHKSSNWSTRLQCCMG 330
GVD GNAS Y K W+ + C+G
Sbjct: 69 GVDENLITGNASNYEKYQAWAKTVPLCIG 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,325,694
Number of Sequences: 369166
Number of extensions: 1187642
Number of successful extensions: 3349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3330
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)